Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_B04
         (241 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p...    26   0.76 
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb...    25   1.3  
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp...    24   2.3  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    24   3.1  
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    23   4.1  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    23   5.4  
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc...    23   7.1  
SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2 |Schizosac...    23   7.1  

>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 0.76
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 121 VPAIASGRVQRHRDGKNAEIQMYLSKLQDLVPFMPKN 231
           + A  SG      DG NA  + Y++   +LV F+PKN
Sbjct: 77  IGATVSGWAPGPLDGSNAAWREYITLDVNLVYFVPKN 113


>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 215 GTKSCNLDRYICISAFLPSRC-LCTR 141
           GT+SC+   YI ++  L  RC LC R
Sbjct: 298 GTQSCDESTYIELACNLVGRCVLCNR 323


>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
           Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = +2

Query: 107 RPAPPSRPSQVVACKGIVTVKTQRYKCTYLNYKTWS 214
           R  PP RP Q   C  ++ + +  Y   Y     WS
Sbjct: 305 RDKPPKRPDQYHTCYCLLGLSSIAYDYRYHTSDGWS 340


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +1

Query: 73   TLTMKAITAVCATGASVPAIAS 138
            TLT + IT V  TG  V AIAS
Sbjct: 2313 TLTREHITVVLITGQIVGAIAS 2334


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 140 VACKGIVTVKTQRYKCTYLNYKTWSP 217
           +A KGI  V T RY   Y+N++   P
Sbjct: 411 MAGKGIRKVNTSRYGNFYVNFEVTIP 436


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 177 DTNVPI*ITRLGPLYAEEQ 233
           +T VPI +T  G LYAE++
Sbjct: 568 ETFVPIGLTSYGRLYAEQR 586


>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 493

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 96  RYRFHCESHLTRALD 52
           RYRF  E H+ R LD
Sbjct: 330 RYRFSFEPHVERLLD 344


>SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = -3

Query: 230 FFGIKGTKSCNLDRYICISAFLPSRCLCTRPLAMAGTEAPVAQTA 96
           FF +  T+    D  +  SA   +RC    PL +     P+  TA
Sbjct: 154 FFNVMNTEEQEADEVMVYSATFDNRC----PLTLQPIVHPILSTA 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 911,265
Number of Sequences: 5004
Number of extensions: 14322
Number of successful extensions: 37
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 41344840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)