Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_B04
(241 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0586 - 18736643-18736914,18737085-18737187,18737279-187379... 29 0.69
07_01_0885 + 7353926-7354770,7354845-7355487 27 2.8
05_04_0411 + 21057838-21058878,21059723-21059926,21060011-21060238 26 4.9
12_01_0830 - 7678038-7678444,7678996-7680943,7681231-7681983,768... 25 6.5
03_05_1079 + 30222017-30222903,30222992-30223117,30223752-302238... 25 6.5
01_06_0101 + 26443080-26443172,26444063-26445139,26445226-26445804 25 6.5
12_01_0340 - 2605770-2605916,2606353-2606595,2607260-2607531,260... 25 8.5
12_01_0026 + 219663-220843,222201-222447,222574-224535 25 8.5
11_05_0002 - 18235576-18235877,18236015-18236075 25 8.5
11_01_0026 + 193383-194566,195726-195972,196099-198063 25 8.5
10_08_0462 - 18116135-18116785 25 8.5
10_02_0157 - 5954439-5954801,5956244-5956270,5956465-5956526,595... 25 8.5
05_05_0159 + 22825086-22826295,22826622-22826635 25 8.5
>09_04_0586 -
18736643-18736914,18737085-18737187,18737279-18737900,
18738376-18738463,18738537-18738614,18738741-18738816,
18738912-18738970,18739061-18739127,18739268-18739405
Length = 500
Score = 28.7 bits (61), Expect = 0.69
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +3
Query: 33 SRNRFNNPVLVLSDSHNESDNGSLRDRRLRPGHR 134
++ R+NNP + ++++ + N S L+ GHR
Sbjct: 396 TKRRYNNPTIYVTENGIDEGNNSTLPEALKDGHR 429
>07_01_0885 + 7353926-7354770,7354845-7355487
Length = 495
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -3
Query: 98 AVIAFIVRVT*HEHWIIKTVS 36
AVI FI RVT E+WI TV+
Sbjct: 257 AVIQFIYRVTFRENWIDVTVN 277
>05_04_0411 + 21057838-21058878,21059723-21059926,21060011-21060238
Length = 490
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 104 ARPAPPSRPSQVVACKGIVTVKTQRYKCTYLNYKT 208
A PAPP RP++++ + C LNY T
Sbjct: 148 AAPAPPRRPAELLRAYTVEIACVSFLICFLLNYFT 182
>12_01_0830 -
7678038-7678444,7678996-7680943,7681231-7681983,
7682701-7682824,7683590-7683723
Length = 1121
Score = 25.4 bits (53), Expect = 6.5
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 144 ATTCDGRDGGAGRANC 97
+TTC G + +GR NC
Sbjct: 442 STTCSGLENSSGRVNC 457
>03_05_1079 +
30222017-30222903,30222992-30223117,30223752-30223808,
30224883-30224913,30225159-30225236,30225297-30225383
Length = 421
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -2
Query: 135 CDGRDGGAGRANCRYRFHC 79
C GR+ G+GR R HC
Sbjct: 274 CTGREDGSGRCTTGSRCHC 292
>01_06_0101 + 26443080-26443172,26444063-26445139,26445226-26445804
Length = 582
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 66 LSDSHNESDNGSLRDRRLRPGHRKW 140
L D D G L D ++ P HR+W
Sbjct: 533 LLDGEVRDDEGELGDLQIVPRHREW 557
>12_01_0340 -
2605770-2605916,2606353-2606595,2607260-2607531,
2607691-2607733,2607822-2607899,2608026-2608085,
2608272-2608331,2609440-2609577,2609655-2609767,
2610333-2610569,2610867-2610918
Length = 480
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/44 (31%), Positives = 17/44 (38%)
Frame = -2
Query: 222 HKGDQVL*FR*VHLYLCVFTVTMPLHATTCDGRDGGAGRANCRY 91
H G Q+ + V L L V + LH D GG G Y
Sbjct: 19 HSGQQIYSQQVVDLMLHVLISLLNLHWPDTDSEQGGGGGGGAAY 62
>12_01_0026 + 219663-220843,222201-222447,222574-224535
Length = 1129
Score = 25.0 bits (52), Expect = 8.5
Identities = 18/60 (30%), Positives = 24/60 (40%)
Frame = -2
Query: 183 LYLCVFTVTMPLHATTCDGRDGGAGRANCRYRFHCESHLTRALDY*NGFANALRTYSAAS 4
L+LC F + G GAG NCR S + G A+A ++AAS
Sbjct: 196 LFLCSFAAADDADVPSPAGNLAGAGEENCRRIAEILSRGRNPMLVGVGAASAADDFAAAS 255
>11_05_0002 - 18235576-18235877,18236015-18236075
Length = 120
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -3
Query: 179 ISAFLPSRCLCTRPLAMAG-TEAPVAQTAV 93
ISAFL CLC+R A+ ++ V QT V
Sbjct: 8 ISAFLLLSCLCSRGEALCSLSDLVVTQTTV 37
>11_01_0026 + 193383-194566,195726-195972,196099-198063
Length = 1131
Score = 25.0 bits (52), Expect = 8.5
Identities = 18/60 (30%), Positives = 24/60 (40%)
Frame = -2
Query: 183 LYLCVFTVTMPLHATTCDGRDGGAGRANCRYRFHCESHLTRALDY*NGFANALRTYSAAS 4
L+LC F + G GAG NCR S + G A+A ++AAS
Sbjct: 197 LFLCSFAAADDADVPSPAGNLAGAGEENCRRIAEILSRGRNPMLVGVGAASAADDFAAAS 256
>10_08_0462 - 18116135-18116785
Length = 216
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 129 GRDGGAGRANCRYRFHCESHLTRAL 55
G DGG GR++C RFH ++ + AL
Sbjct: 111 GGDGG-GRSSCDGRFHPDTAMVVAL 134
>10_02_0157 -
5954439-5954801,5956244-5956270,5956465-5956526,
5956971-5957592
Length = 357
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Frame = +2
Query: 95 RQFARPAPPSRPSQVVACKGIVTVKTQR----YKCTYLNYK-TWSPLCRR 229
++ A+P PP + V AC+ + + Y+CT Y +WS + R
Sbjct: 251 KEAAQPLPPCCMNDVAACRSPIASPSPMAGAPYQCTIATYPLSWSLISLR 300
>05_05_0159 + 22825086-22826295,22826622-22826635
Length = 407
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = -2
Query: 171 VFTVTMPLHATTCDGRDGGAGRANCR 94
V +T+PLH C G G CR
Sbjct: 61 VSRLTVPLHCLLCPATPGTEGNVACR 86
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,401,825
Number of Sequences: 37544
Number of extensions: 113579
Number of successful extensions: 405
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 58
effective length of database: 12,615,796
effective search space used: 264931716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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