Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_B04
         (241 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF141870-1|AAD37575.1|  764|Homo sapiens translational control p...    28   4.6  

>AF141870-1|AAD37575.1|  764|Homo sapiens translational control
           protein 80 protein.
          Length = 764

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +2

Query: 98  QFARPAPPSRP-SQVVACKG 154
           QF+RP PPSRP   VV C G
Sbjct: 688 QFSRPPPPSRPRCCVVRCSG 707


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,307,420
Number of Sequences: 237096
Number of extensions: 553901
Number of successful extensions: 1456
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1456
length of database: 76,859,062
effective HSP length: 58
effective length of database: 63,107,494
effective search space used: 1325257374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)