Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_B04
(241 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132895-2|CAC14404.1| 613|Caenorhabditis elegans Hypothetical ... 27 1.8
U18780-1|AAB03373.1| 239|Caenorhabditis elegans alcohol dehydro... 26 3.1
Z96047-4|CAB09414.1| 796|Caenorhabditis elegans Hypothetical pr... 25 5.4
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 25 5.4
Z49937-3|CAA90186.2| 455|Caenorhabditis elegans Hypothetical pr... 25 7.2
U31537-1|AAA82991.1| 455|Caenorhabditis elegans variable abnorm... 25 7.2
AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily a... 25 7.2
Z81555-6|CAJ85762.1| 709|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z81555-5|CAB04517.2| 694|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z48245-1|CAA88290.1| 356|Caenorhabditis elegans Hypothetical pr... 25 9.5
>AL132895-2|CAC14404.1| 613|Caenorhabditis elegans Hypothetical
protein Y59A8A.2 protein.
Length = 613
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 174 CVFTVTMPLHATTCDGRDGGAGRANCRYRF 85
C++ +T+P H C R G RA+ R R+
Sbjct: 155 CLYGLTLPPHCEFCPSRFGAFKRADIRGRW 184
>U18780-1|AAB03373.1| 239|Caenorhabditis elegans alcohol
dehydrogenase protein.
Length = 239
Score = 26.2 bits (55), Expect = 3.1
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 88 AITAVCATGASVPAIASGRVQRHRDGKNAEIQMYLSKLQDLVPFMPK 228
AI CA G V A+ GR + H G AE + + D+V + K
Sbjct: 79 AIQYACAMGMRVVAMDHGRKEAHCKGLGAEWFVDAFETPDIVSHITK 125
>Z96047-4|CAB09414.1| 796|Caenorhabditis elegans Hypothetical
protein DY3.5 protein.
Length = 796
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 110 PAPPSRPSQVVACKGIVTVKTQ 175
P PP+RP+ V+A V K+Q
Sbjct: 620 PPPPTRPASVIAPSSSVVPKSQ 641
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 25.4 bits (53), Expect = 5.4
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = -3
Query: 218 KGTKSCNLDRYICISAFLPSRCLCTRPLAMAGTEAPVAQTAVIAFIVRV 72
+G SCN + C F CT + + T PV TA+ FI+ +
Sbjct: 1792 RGGSSCNQNICQCAVGFSVDNGRCTPTIEVRFTMLPVT-TAIPVFIIEL 1839
>Z49937-3|CAA90186.2| 455|Caenorhabditis elegans Hypothetical
protein F14F3.1a protein.
Length = 455
Score = 25.0 bits (52), Expect = 7.2
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Frame = -3
Query: 218 KGTKSCNLDRYICISAFLPSRCLC-------TRPLAMAGTEAPVAQTAVI 90
KG + C++ R + +S S+ LC RP A+ G++ VA + V+
Sbjct: 36 KGCRPCDISRLLQVSNGCVSKILCRYYESGTIRPRAIGGSKPRVATSDVV 85
>U31537-1|AAA82991.1| 455|Caenorhabditis elegans variable
abnormal-3 protein.
Length = 455
Score = 25.0 bits (52), Expect = 7.2
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Frame = -3
Query: 218 KGTKSCNLDRYICISAFLPSRCLC-------TRPLAMAGTEAPVAQTAVI 90
KG + C++ R + +S S+ LC RP A+ G++ VA + V+
Sbjct: 36 KGCRPCDISRLLQVSNGCVSKILCRYYESGTIRPRAIGGSKPRVATSDVV 85
>AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily
assigned gene nameprotein 300 protein.
Length = 501
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 93 YRFHCESHLTRALDY*NGFANALRTYSAA 7
+ +HC H+ L + +A ALR SAA
Sbjct: 277 FAYHCGKHVLVVLTDMSSYAEALREISAA 305
>Z81555-6|CAJ85762.1| 709|Caenorhabditis elegans Hypothetical
protein F58E10.1b protein.
Length = 709
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +2
Query: 95 RQFARPAPPSRPSQVVACKGIVTVKTQRYKCTYLNYKTWSPLCRR 229
R+ R A PS +C + +KC+ L TWS + +R
Sbjct: 506 RRLKRVAVPSVTESNESCVSLFMRSALYHKCSLLRDATWSIIEKR 550
>Z81555-5|CAB04517.2| 694|Caenorhabditis elegans Hypothetical
protein F58E10.1a protein.
Length = 694
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +2
Query: 95 RQFARPAPPSRPSQVVACKGIVTVKTQRYKCTYLNYKTWSPLCRR 229
R+ R A PS +C + +KC+ L TWS + +R
Sbjct: 491 RRLKRVAVPSVTESNESCVSLFMRSALYHKCSLLRDATWSIIEKR 535
>Z48245-1|CAA88290.1| 356|Caenorhabditis elegans Hypothetical
protein T27D1.3 protein.
Length = 356
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 239 IFLFFGIKGTKSCNLDRYICISAFLPSRCLCTR 141
+FLF I ++RYI I + +R LC+R
Sbjct: 102 VFLFASISTQMIVCIERYIAIVLPMQARQLCSR 134
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,277,211
Number of Sequences: 27780
Number of extensions: 90036
Number of successful extensions: 266
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 12,740,198
effective HSP length: 59
effective length of database: 11,101,178
effective search space used: 222023560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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