Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_B04
         (241 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   0.30 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   0.91 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   1.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   2.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   2.1  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    20   3.7  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    20   4.9  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    19   6.4  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    19   6.4  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    19   8.5  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 0.30
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 110  PAPPSRPSQVVACK 151
            P PP+ P QVV+C+
Sbjct: 1109 PLPPALPPQVVSCQ 1122


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 0.91
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = +1

Query: 73  TLTMKAITAVCATGASVPAIASGRVQRHRDGKNAEIQMYLSKLQD 207
           T T  A  A  AT  +   I    +QRH   +N    +  + +QD
Sbjct: 114 TTTTTATAAATATTTATGLIKQETLQRHHHLQNHHHHLQSTAVQD 158


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 1.2
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +2

Query: 134 QVVACKGIVTVKTQ--RYKCTYLNYKTWSPL 220
           Q++A K I  V T   ++K   L Y TW P+
Sbjct: 248 QILAKKEIKGVPTYLIKWKNWDLKYNTWEPI 278


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 2.1
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 88  AITAVCATGASVPAIASGRVQRHRDGKNAEIQMYLSK 198
           A+T     G    +I    V + + G N EI MY+ +
Sbjct: 201 ALTCEGCKGFFRRSITKNAVYQCKYGNNCEIDMYMRR 237


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 2.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 107 RPAPPSRPSQVVACKGIVTVK 169
           RP+  S  SQ++ C G+V V+
Sbjct: 759 RPSFISPRSQLIICSGLVFVQ 779


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 20.2 bits (40), Expect = 3.7
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 127 AIASGRVQRHRDGKNAEIQMYLSK 198
           +I    V + + G N EI MY+ +
Sbjct: 11  SITKNAVYQCKYGNNCEIDMYMRR 34


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 19.8 bits (39), Expect = 4.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 88  AITAVCATGASVPAIASGRVQR 153
           AI  +C++  S PAI   R  R
Sbjct: 168 AIVWICSSAISFPAIVWWRAVR 189


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 19.4 bits (38), Expect = 6.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 178 IQMYLSKLQDLVPFMPKNRKI 240
           I M L + Q    F+P +RKI
Sbjct: 72  IPMQLGRRQPFSLFIPAHRKI 92


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 19.4 bits (38), Expect = 6.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 112 GASVPAIASGRVQRHRDGK 168
           G+ V  +  G+V+  RDGK
Sbjct: 136 GSIVYVMEEGKVEVSRDGK 154


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 19.0 bits (37), Expect = 8.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 131 SQVVACKGIVTVKTQR 178
           SQV+AC G   V+ +R
Sbjct: 243 SQVIACVGQQNVEGKR 258


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,187
Number of Sequences: 438
Number of extensions: 1042
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4024224
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)