Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_B03
(217 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 25 1.0
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 25 1.4
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi... 25 1.4
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 1.8
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 25 1.8
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 24 2.4
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa... 24 3.1
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 24 3.1
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar... 23 4.1
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 23 5.5
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem... 23 5.5
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ... 23 7.2
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 23 7.2
SPAC5H10.10 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch... 23 7.2
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 23 7.2
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 23 7.2
SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces pomb... 22 9.6
SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF... 22 9.6
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 22 9.6
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 22 9.6
SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 22 9.6
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 25.4 bits (53), Expect = 1.0
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +3
Query: 12 LFICAYTAPFSVQDILDVFGSPIKDFKETFSSDSGL-NKTNTAF-AFSSMNTSVSTIKST 185
L +CA APF++ + D+F +K SGL N+ +T + + S+S +KS
Sbjct: 79 LRLCAPDAPFTLSQLEDIFQVILKIL-------SGLMNQESTYYPQIYEILESLSNVKSA 131
Query: 186 MIEVP-PNAE 212
++ V PNAE
Sbjct: 132 VLIVDLPNAE 141
>SPCC1753.02c |git3||G-protein coupled receptor
Git3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 25.0 bits (52), Expect = 1.4
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = -1
Query: 187 IVLLIVLTD--VFIELNANAVLVLFNPLSDENVSLKSF 80
+++L+ +TD +FI + NA+LVLF + E L F
Sbjct: 105 LLVLVRMTDYWIFINILHNALLVLFPHVDTERRGLYRF 142
>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 25.0 bits (52), Expect = 1.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 111 SGLNKTNTAFAFSSMNTSVST 173
SG+N TN+ + S MN S ST
Sbjct: 78 SGMNMTNSTTSMSGMNMSNST 98
Score = 23.8 bits (49), Expect = 3.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 102 SSDSGLNKTNTAFAFSSMNTSVST 173
+S SG+N TN+ S MN + ST
Sbjct: 63 TSMSGMNMTNSTTPMSGMNMTNST 86
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 24.6 bits (51), Expect = 1.8
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 90 KETFSSDSGLNKTNTAFAFSSMNTSVSTIKSTMIEVPPNAES 215
+ETF SG+NK+ + F+ +++S+ + I N +S
Sbjct: 113 EETFPLTSGMNKSVHEYPFTLSESAISSSHKSSIPERRNFDS 154
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -1
Query: 109 SDENVSLKSFIGLPNTSKMSCTENG 35
S+E +SL I +P+ + ++C NG
Sbjct: 561 SNEQISLLLKIIIPSLTTLACDNNG 585
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 24.6 bits (51), Expect = 1.8
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 81 KDFKETFSSDSGLNKTNTAFAFSSMNTSVSTIKSTMIEVPPNAE 212
KDFKET + + A + N +++T S M E P +E
Sbjct: 426 KDFKETEDMNGAEDMHGRAPQITKDNLNLTTTDSPMSEAEPVSE 469
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 24.2 bits (50), Expect = 2.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 102 SSDSGLNKTNTAFAFSSMNTSVSTIKS 182
SSD +TN+ F S+ N+S+ + +S
Sbjct: 122 SSDDVFTETNSGFRSSNQNSSLKSFQS 148
>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
exchanger|Schizosaccharomyces pombe|chr 3|||Manual
Length = 412
Score = 23.8 bits (49), Expect = 3.1
Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = -1
Query: 202 GGTSIIVLLIVLTDVFIELNANAVLVLFNPLSDE-NVSLKSFIGL 71
G S I +L ++T VF+ L A+ ++ + L +E N+S K+F+GL
Sbjct: 261 GLRSSIAMLAIVT-VFVSLCADYLVGSIDQLVEEVNIS-KTFVGL 303
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 23.8 bits (49), Expect = 3.1
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = +3
Query: 9 NLFICAYTAPFSVQDILDVFGSPIKDFKETFSSDSGLNKTNTAFAFSSMNTSVSTIKSTM 188
NL +TA + + VF + F T D + N ++F+ VST +S
Sbjct: 800 NLLQQYFTAIYKFEGCGSVFPFVVDPFT-TILDDVLSFEANKVYSFAISLMKVSTFESCT 858
Query: 189 IEVPP 203
E+PP
Sbjct: 859 KELPP 863
>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 23.4 bits (48), Expect = 4.1
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +3
Query: 36 PFSVQDILDVFGSPIKDFKETFSSDSGLNK 125
P S DIL P KD K S SGL K
Sbjct: 439 PSSFTDILTQKTIPCKDHKLKIKSKSGLPK 468
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 48 QDILDVFGSPIKDFKETFSSDSGLNKTNT 134
QD+ + SP+ D T S +GL + T
Sbjct: 908 QDVTESKASPVADASATHQSSTGLTQEIT 936
>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
membrane translocase Oxa101|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/42 (23%), Positives = 19/42 (45%)
Frame = -1
Query: 175 IVLTDVFIELNANAVLVLFNPLSDENVSLKSFIGLPNTSKMS 50
I L ++++ N N + PL+ V F + S++S
Sbjct: 146 IALRGIYLKHNVNPFAIFILPLTQSAVFFSFFYAIRKMSRLS 187
>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 22.6 bits (46), Expect = 7.2
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +3
Query: 54 ILDVFGSPIKDFKETFSSDSGLNKTNTAFAFSSMNTSVST 173
ILDV + DF+E D+ L + + + T V+T
Sbjct: 14 ILDVIANSRSDFEENGVDDATLRELQNLWQSKLVATDVAT 53
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 22.6 bits (46), Expect = 7.2
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 142 ANAVLVLFNPLSDENVSLKSFIGLPNTSKM 53
AN L LF+P +D S+ + LP+ +
Sbjct: 46 ANNELALFSPTADSPSSVDGVLELPSAENV 75
>SPAC5H10.10 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 22.6 bits (46), Expect = 7.2
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = -1
Query: 124 LFNPLSDENVSLKSFIGLPNTSKMSCTENGAVYAQINK 11
LF P+ N+ L+ + +++ C +NG V + K
Sbjct: 13 LFQPIKVGNMQLQHRMVHAPATRLRCLDNGLVMTDLVK 50
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -1
Query: 169 LTDVFIELNANAVLVLFNPLSDENVS 92
L+ + E NA+++++ PLS N+S
Sbjct: 38 LSHIEKESNASSIIISQQPLSPSNIS 63
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -1
Query: 88 KSFIGLPNTSKMSCTEN 38
K+ +G P+T+ SC EN
Sbjct: 1287 KNALGAPDTATKSCKEN 1303
>SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 22.2 bits (45), Expect = 9.6
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -1
Query: 139 NAVLVLFNPLSDENVSLKSFIGLPNTSKMS 50
++V V L ++ ++ FI P+T KMS
Sbjct: 46 SSVTVPRTVLGGKSTNISKFISAPSTKKMS 75
>SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF4E
4F complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 22.2 bits (45), Expect = 9.6
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = +3
Query: 51 DILDVFGSP-IKDFKETFSSD--SGLNKTNTAFAF 146
D+LD+FGSP +K +E + GL+ N AF
Sbjct: 26 DLLDLFGSPKVKTEREGRPARLLEGLSAVNAETAF 60
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 22.2 bits (45), Expect = 9.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 87 FKETFSSDSGLNKTNTAFAFSSMNTSVSTIKSTM 188
FK DSG+ K+N F+ ++ + KST+
Sbjct: 11 FKTVLIGDSGVGKSNLLMRFTRNEFNIES-KSTI 43
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 22.2 bits (45), Expect = 9.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 129 NTAFAFSSMNTSVSTIKSTMIEVPPN 206
+TAF+ + ++T VS I PPN
Sbjct: 729 STAFSTAPVSTIVSNISPLPTVAPPN 754
>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 335
Score = 22.2 bits (45), Expect = 9.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 57 LDVFGSPIKDFKETFSSDS 113
LD+FGSP + K T S S
Sbjct: 252 LDLFGSPSSENKSTAGSAS 270
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 774,434
Number of Sequences: 5004
Number of extensions: 11161
Number of successful extensions: 59
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 51
effective length of database: 2,107,274
effective search space used: 42145480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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