Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_B03
         (217 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0465 + 25427065-25427113,25428099-25428227,25428387-254284...    29   0.51 
06_03_1496 - 30567968-30568210,30568345-30568513,30568635-305687...    28   1.2  
09_04_0551 - 18488584-18490017                                         26   3.6  
02_04_0312 - 21942310-21943356                                         26   3.6  
05_03_0584 + 15753216-15753464,15754267-15754479,15754578-15754703     25   6.3  
11_01_0398 - 3008074-3008428,3009775-3009926,3010070-3011368           25   8.3  
07_03_1020 + 23344657-23346969                                         25   8.3  
03_06_0559 + 34719296-34719410,34719519-34719577,34719664-347213...    25   8.3  

>04_04_0465 +
           25427065-25427113,25428099-25428227,25428387-25428479,
           25428681-25428953,25429037-25429288,25429735-25430118,
           25430243-25430483,25431986-25432736
          Length = 723

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 102 SSDSGLNKTNTAFAFSSMNTSVSTIKSTMIEVPPNAES 215
           S+ S   KT    +FSSM +S ++  ST+   PP  ++
Sbjct: 257 SNSSATRKTGMRSSFSSMTSSTASFVSTIATCPPTVKT 294


>06_03_1496 - 30567968-30568210,30568345-30568513,30568635-30568736,
            30569087-30571855,30572402-30572430,30572546-30572659,
            30572735-30572846,30574730-30574845,30574928-30575068,
            30575121-30575243,30575346-30575478,30575842-30575972,
            30576065-30576300,30577073-30577376
          Length = 1573

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 18   IC-AYTAPFSVQDILDVFGSPIKDFKETFSSDS 113
            +C AY A   V+D+  + G P+ DF++  SS S
Sbjct: 1205 VCDAYRAQQRVEDVQVIIGRPLADFEQFISSAS 1237


>09_04_0551 - 18488584-18490017
          Length = 477

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -1

Query: 178 LIVLTDVFIELNANAVLVLFNP-LSDENVSLKSFIGLPNTSKMSCT 44
           ++VL DVF++      + L NP + D++ +  + +    +SK S T
Sbjct: 19  MMVLADVFLDHGYAVAVALINPSVKDDDAAFTAAVARAVSSKSSAT 64


>02_04_0312 - 21942310-21943356
          Length = 348

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -1

Query: 193 SIIVLLIVLTDVFIELNANAVLVLFNPLSDEN 98
           SI   + V   VFI L A A L LF PL D++
Sbjct: 41  SISFFMAVFFPVFIVLLAFACLRLFRPLDDDD 72


>05_03_0584 + 15753216-15753464,15754267-15754479,15754578-15754703
          Length = 195

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -1

Query: 208 AFGGTSIIVLLIVLTDVFIEL--NANAVLVLFNPLSDENVSLKSFIGLPNTSKMSCT 44
           AF G S+    I+ T   I +  N N V V   P S+   +  S+  + NTS+ +CT
Sbjct: 88  AFRGNSLDYKDIIYTAKSISVCSNRNEVHVFMPPRSNFQDTKASYRLIGNTSRRACT 144


>11_01_0398 - 3008074-3008428,3009775-3009926,3010070-3011368
          Length = 601

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 30  TAPFSVQDILDVFGSPIKDFKETFSS 107
           T+P   + I D  GSP  DF + F+S
Sbjct: 238 TSPMPPEIITDYVGSPTTDFLKKFNS 263


>07_03_1020 + 23344657-23346969
          Length = 770

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +3

Query: 24  AYTAPFSVQDILDVFGSPIKDFKETFSSDSGLNKTNTAFAFSS 152
           +Y+    + D  +   SP+  F     + +G N+  TA  FSS
Sbjct: 452 SYSKAEKLMDYFESAASPVASFSFACETVTGENRAPTAVGFSS 494


>03_06_0559 +
           34719296-34719410,34719519-34719577,34719664-34721322,
           34722421-34722562,34722645-34723330
          Length = 886

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 96  TFSSDSGLNKTNTAFAFSSMNTSVSTIKSTMIEVPPNAES 215
           T S+ +  +K   A AFS  + + S+I  T  ++PP+  S
Sbjct: 670 TTSNSACFSKFLEADAFSEYSDTASSITVTTTDIPPSDSS 709


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,814,086
Number of Sequences: 37544
Number of extensions: 62932
Number of successful extensions: 179
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 14,793,348
effective HSP length: 51
effective length of database: 12,878,604
effective search space used: 257572080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)