Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_B03
(217 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U43283-2|AAC69020.1| 205|Caenorhabditis elegans Rab family prot... 29 0.59
Z12017-9|CAA78053.1| 537|Caenorhabditis elegans Hypothetical pr... 27 1.8
Z11505-11|CAA77591.1| 537|Caenorhabditis elegans Hypothetical p... 27 1.8
U68254-1|AAB16969.1| 67|Caenorhabditis elegans rab6-like protein. 27 1.8
Z22181-4|CAA80182.1| 824|Caenorhabditis elegans Hypothetical pr... 26 4.2
Z82076-6|CAH10809.1| 450|Caenorhabditis elegans Hypothetical pr... 25 5.5
Z82076-4|CAB04937.2| 438|Caenorhabditis elegans Hypothetical pr... 25 5.5
U88315-5|ABO16438.1| 355|Caenorhabditis elegans Hypothetical pr... 25 7.3
AF042395-1|AAC08946.1| 159|Caenorhabditis elegans FMRFamide-lik... 25 9.7
AF038612-1|AAB92043.1| 348|Caenorhabditis elegans Hypothetical ... 25 9.7
>U43283-2|AAC69020.1| 205|Caenorhabditis elegans Rab family protein
6.2 protein.
Length = 205
Score = 28.7 bits (61), Expect = 0.59
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +3
Query: 66 FGSPIKDFKETFSSDSGLNKTN--TAFAFSSM-NTSVSTI 176
FG+P+K FK F + + KT+ T F + S NT +TI
Sbjct: 4 FGNPLKKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATI 43
>Z12017-9|CAA78053.1| 537|Caenorhabditis elegans Hypothetical
protein R08D7.7 protein.
Length = 537
Score = 27.1 bits (57), Expect = 1.8
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = -1
Query: 196 TSIIVLLIVLTDVFIELNANAVLVLFNPLSDENVSLKSFIGL-PNTSKMS--CTENGAV 29
+S+ L ++ TD+ I L + + F P + N+ F PN+ M+ C +NG++
Sbjct: 277 SSLAGLSLLPTDIGISLGTSDTVFFFTPTFEPNIDAHVFSHFAPNSGYMAMVCFKNGSL 335
>Z11505-11|CAA77591.1| 537|Caenorhabditis elegans Hypothetical
protein R08D7.7 protein.
Length = 537
Score = 27.1 bits (57), Expect = 1.8
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = -1
Query: 196 TSIIVLLIVLTDVFIELNANAVLVLFNPLSDENVSLKSFIGL-PNTSKMS--CTENGAV 29
+S+ L ++ TD+ I L + + F P + N+ F PN+ M+ C +NG++
Sbjct: 277 SSLAGLSLLPTDIGISLGTSDTVFFFTPTFEPNIDAHVFSHFAPNSGYMAMVCFKNGSL 335
>U68254-1|AAB16969.1| 67|Caenorhabditis elegans rab6-like protein.
Length = 67
Score = 27.1 bits (57), Expect = 1.8
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +3
Query: 66 FGSPIKDFKETFSSDSGLNKTN--TAFAFSSM-NTSVSTI 176
FG+P+K F+ F + + KT+ T F + S NT +TI
Sbjct: 4 FGNPLKKFELVFLGEQSVGKTSLITRFMYDSFDNTYQATI 43
>Z22181-4|CAA80182.1| 824|Caenorhabditis elegans Hypothetical
protein ZK632.5 protein.
Length = 824
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/46 (23%), Positives = 25/46 (54%)
Frame = +3
Query: 54 ILDVFGSPIKDFKETFSSDSGLNKTNTAFAFSSMNTSVSTIKSTMI 191
+L + + + + ET +S++ + +AF MNT++ I+ M+
Sbjct: 640 VLRMLHTALNEVLETRNSETLTREPRLRYAFFHMNTTIFAIRKNML 685
>Z82076-6|CAH10809.1| 450|Caenorhabditis elegans Hypothetical
protein W07G1.5b protein.
Length = 450
Score = 25.4 bits (53), Expect = 5.5
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -1
Query: 118 NPLSDENVSLKSFIGLPNTSKMSCTENGAVYAQINKFLV 2
+PLS VS S I N K+S +NG Y + KF++
Sbjct: 16 DPLSSSGVSSLSGISSYNIRKISIYKNGDRYHRGVKFVI 54
>Z82076-4|CAB04937.2| 438|Caenorhabditis elegans Hypothetical
protein W07G1.5a protein.
Length = 438
Score = 25.4 bits (53), Expect = 5.5
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -1
Query: 118 NPLSDENVSLKSFIGLPNTSKMSCTENGAVYAQINKFLV 2
+PLS VS S I N K+S +NG Y + KF++
Sbjct: 16 DPLSSSGVSSLSGISSYNIRKISIYKNGDRYHRGVKFVI 54
>U88315-5|ABO16438.1| 355|Caenorhabditis elegans Hypothetical
protein C37H5.14 protein.
Length = 355
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 51 DILDVFGSPIKDFKETFSSDSGLNKTNT-AFAFSSMNTSVSTI 176
D LD++GSP++ + ++G +K T A+ SV+TI
Sbjct: 226 DCLDIYGSPVEFKSISKPLETGWDKNRTMAWYMQCFFASVNTI 268
>AF042395-1|AAC08946.1| 159|Caenorhabditis elegans FMRFamide-like
peptide 9 protein.
Length = 159
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 12 LFICAYTAPFSVQDILDVFGSPIK 83
+++CA T P V IL +PIK
Sbjct: 3 VYVCAQTPPIRVLSILSQDSAPIK 26
>AF038612-1|AAB92043.1| 348|Caenorhabditis elegans Hypothetical
protein F13B6.1 protein.
Length = 348
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = -1
Query: 166 TDVFIELNANA--VLVLFNPLSDENVSLKSFIGLPNTSKM 53
T+VF ++++ A + V N + +N L F+GLP++ M
Sbjct: 130 TNVFFKMSSPAGKIPVAQNVVIGKNQVLNGFVGLPDSKDM 169
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,359,056
Number of Sequences: 27780
Number of extensions: 63608
Number of successful extensions: 234
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 12,740,198
effective HSP length: 51
effective length of database: 11,323,418
effective search space used: 226468360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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