Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_B02
         (104 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   0.60 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   0.60 
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    19   4.3  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          19   5.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      19   5.6  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    19   5.6  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    18   9.8  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    18   9.8  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    18   9.8  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 0.60
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 24  RVFYPCRFYCFPI*RYKMSIHIKD 95
           R+ +P  F CF +  + + +HI D
Sbjct: 409 RIVFPVCFVCFNLMYWIIYLHISD 432


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 0.60
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 24  RVFYPCRFYCFPI*RYKMSIHIKD 95
           R+ +P  F CF +  + + +HI D
Sbjct: 409 RIVFPVCFVCFNLMYWIIYLHISD 432


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 57  ENNKIDTGRTR 25
           ENNKID+  TR
Sbjct: 376 ENNKIDSRVTR 386


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 69  YKMSIHIKDFD 101
           +K+  H KDFD
Sbjct: 112 FKLFYHAKDFD 122



 Score = 18.2 bits (35), Expect = 9.8
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 3   LQEFGTRRVFYP 38
           L+EF  ++ FYP
Sbjct: 282 LEEFDWQKPFYP 293


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 69  YKMSIHIKDFD 101
           +K+  H KDFD
Sbjct: 112 FKLFYHAKDFD 122



 Score = 18.2 bits (35), Expect = 9.8
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 3   LQEFGTRRVFYP 38
           L+EF  ++ FYP
Sbjct: 282 LEEFDWQKPFYP 293


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 5/13 (38%), Positives = 11/13 (84%)
 Frame = +2

Query: 32  LPVSILLFSYLKV 70
           LP+ +++F+Y K+
Sbjct: 217 LPLFVMVFTYYKI 229


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 1   CCRNSARGACSTRVDFIVFLFKGTKC 78
           C +NSA    S  V  + F    TKC
Sbjct: 98  CLKNSADTISSYFVGKMYFNLIDTKC 123


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 1   CCRNSARGACSTRVDFIVFLFKGTKC 78
           C +NSA    S  V  + F    TKC
Sbjct: 103 CLKNSADTISSYFVGKMYFNLIDTKC 128


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 1   CCRNSARGACSTRVDFIVFLFKGTKC 78
           C +NSA    S  V  + F    TKC
Sbjct: 103 CLKNSADTISSYFVGKMYFNLIDTKC 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,587
Number of Sequences: 438
Number of extensions: 269
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 15
effective length of database: 139,773
effective search space used:  2655687
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)