Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_A24
         (432 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0773 + 5963165-5963306,5963440-5963489,5963580-5963645,596...    28   2.8  
01_06_1501 + 37804029-37804600,37804626-37805388                       27   8.6  
01_01_0592 + 4414416-4415132                                           27   8.6  

>07_01_0773 +
           5963165-5963306,5963440-5963489,5963580-5963645,
           5964162-5964188,5965320-5965375,5966613-5966681,
           5966901-5966995,5967141-5967251,5970545-5970879,
           5971218-5971253,5971254-5971421
          Length = 384

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 358 PTPWCSRSPSYPTVYRVRRPTQNG 429
           PTP CS   SYP+    RRP+  G
Sbjct: 15  PTPRCSACESYPSTTTWRRPSPAG 38


>01_06_1501 + 37804029-37804600,37804626-37805388
          Length = 444

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +2

Query: 308 RQLKEHGEL-EQSTEGRLRLHGAAGLRVIQQSTGCVD 415
           R L  HG++  ++T  R R H  A  RV+     CVD
Sbjct: 129 RLLARHGDVPRRATRPRRRRHPRAARRVVLLGCACVD 165


>01_01_0592 + 4414416-4415132
          Length = 238

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 119 GNFASNSHRLRHRHGRQVLRVVRLR 193
           G+ A+ +HR   R GR+ +R V +R
Sbjct: 154 GSLAAGAHRAASRRGRRAVRAVHVR 178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,018,261
Number of Sequences: 37544
Number of extensions: 158374
Number of successful extensions: 560
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)