Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_A24
         (432 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical pr...    33   0.088
U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical pr...    33   0.088
Z83114-4|CAB05554.4|  739|Caenorhabditis elegans Hypothetical pr...    27   4.4  

>U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical
           protein C18C4.5b protein.
          Length = 1046

 Score = 33.1 bits (72), Expect = 0.088
 Identities = 13/54 (24%), Positives = 31/54 (57%)
 Frame = +3

Query: 243 LQDLEKHAQDFQKTISEQFNAIVNSKNTESLNKALKEGSDSMVQQVSELSNSLQ 404
           ++DL+K    F   + ++ + I   K+  S+N   ++  DS+ +++SE+  +L+
Sbjct: 153 VEDLQKQVSSFMSQMQDKNSEIQKMKDAISVNDVSRQNMDSLSEKLSEMDRTLR 206


>U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical
           protein C18C4.5a protein.
          Length = 1022

 Score = 33.1 bits (72), Expect = 0.088
 Identities = 13/54 (24%), Positives = 31/54 (57%)
 Frame = +3

Query: 243 LQDLEKHAQDFQKTISEQFNAIVNSKNTESLNKALKEGSDSMVQQVSELSNSLQ 404
           ++DL+K    F   + ++ + I   K+  S+N   ++  DS+ +++SE+  +L+
Sbjct: 153 VEDLQKQVSSFMSQMQDKNSEIQKMKDAISVNDVSRQNMDSLSEKLSEMDRTLR 206


>Z83114-4|CAB05554.4|  739|Caenorhabditis elegans Hypothetical
           protein K09B11.10 protein.
          Length = 739

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 102 VHCFYLATSLRTRTDSDTAMAAK-CFVLFACVALAHGAMVRRDAPNTILQDLEKHAQDFQ 278
           + C    TSL  +    T   A+ C V    +AL+   +   D+P  I  DL+ +AQ F+
Sbjct: 327 IPCSQRTTSLSLKYWMKTGTQAEICAVDEDGIALSCAYLEPNDSPGPITIDLDSYAQPFK 386

Query: 279 KTI 287
            T+
Sbjct: 387 FTV 389


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,247,047
Number of Sequences: 27780
Number of extensions: 132823
Number of successful extensions: 459
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)