Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_A21
         (462 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...   142   3e-35
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    27   1.4  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    25   4.3  
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    25   4.3  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   7.4  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    24   9.8  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    24   9.8  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score =  142 bits (343), Expect = 3e-35
 Identities = 70/133 (52%), Positives = 91/133 (68%), Gaps = 1/133 (0%)
 Frame = +1

Query: 67  IPNGHFHKDWQRFVKTWFDQPARRHRRKQNRIXXXXXXXXXXXXXXLLPEVRCPTVRNHT 246
           +PN HFHKDWQR+VKTWF+QP R+ RR+Q R               + P V+ PT+R + 
Sbjct: 9   LPNAHFHKDWQRYVKTWFNQPGRKLRRRQAR-QTKAAKIAPRPVEAIRPAVKPPTIRYNM 67

Query: 247 KVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRARLILFP 426
           KVRAGRGFTL E++A+G++   A TIGI VD RRRN+S ESLQ NV+R+K Y A LI+FP
Sbjct: 68  KVRAGRGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFP 127

Query: 427 -KGKKVLKGEANE 462
            K  +  KG+A +
Sbjct: 128 RKAGQPKKGDATD 140


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -1

Query: 168 LFYSILLSTMTTSWLIKPCLHKS--LPILMEMAIWYHIIPFTH 46
           L  S+ L  +T +WL++    +S   P  + +A W  I  FTH
Sbjct: 204 LAISMFLGFITLTWLLRCIKSQSGVQPAQISLAFWVFIFVFTH 246


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 17/59 (28%), Positives = 23/59 (38%)
 Frame = -3

Query: 223 NELRVIEGQRQDEEQQL*PFLFYSAFYDDDELADQTMSSQIFANPYGNGHLVSYYSLYP 47
           N ++ I+GQ  D  +Q   F  Y    DDD+  D    S        N  +    SL P
Sbjct: 223 NAVKNIDGQDDDSSEQTAAFEEYDD--DDDDDVDDNEQSNSMIETSANADITPKASLLP 279


>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 301 NPSFARTIGIAVDPRRRNKSVESLQINV 384
           NPS A    +A D    ++S+ES   NV
Sbjct: 396 NPSVAAASNVAADQSTEDESIESTSTNV 423


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -1

Query: 174  FSLFYSILLSTMTTSWLIKPCLHKSLPILMEMAIWY 67
            FSL +    +  T  W+ + CL + +  +   A+WY
Sbjct: 2094 FSLNFGEEGAVQTRIWVFRACLVQGVQQVWSAALWY 2129


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -1

Query: 195  GRTRSNSFSLFYSILLSTMTTSW-LIKPCLHKSLPILMEMAIWYH 64
            G T S   S    ++L T+TT     K  L++ LP+   + +W H
Sbjct: 1724 GFTASIGSSELSQVILMTVTTKKEYYKKFLNEPLPMESHLQVWLH 1768


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 428 FGKRIRRALYSFNL*TLICNDSTDLLRLRGST 333
           +GK +  A  + +L T +C++ TD L L+G +
Sbjct: 541 YGKSLHEA--ALDLLTKLCDEPTDTLSLKGKS 570


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,913,273
Number of Sequences: 5004
Number of extensions: 36418
Number of successful extensions: 102
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)