Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_A19
(341 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 100 7e-23
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 100 7e-23
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 100 7e-23
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 48 5e-07
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 45 3e-06
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 31 0.065
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 27 0.80
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 1.1
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 26 1.8
SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit |Sc... 25 2.4
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 25 2.4
SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit... 25 3.2
SPAC959.10 |sen15||tRNA-splicing endonuclease subunit Sen15|Schi... 25 3.2
SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ... 25 4.3
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 25 4.3
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 24 5.6
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 24 5.6
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak... 24 5.6
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c... 24 5.6
SPAC17C9.02c |lys7||alpha-aminoadipate reductase phosphopantethe... 24 5.6
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 24 7.5
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 23 9.8
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 23 9.8
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 100 bits (239), Expect = 7e-23
Identities = 43/77 (55%), Positives = 59/77 (76%)
Frame = +2
Query: 110 NKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNSAAVAFVPISGWHGDNMLEPSTKMPWFK 289
NKMD+T +S++RFEEI KE S++IKK+G+N V FVP+SG+ GDNM+EP+T MPW++
Sbjct: 153 NKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQ 210
Query: 290 GWLVERKEGKAEGKCLI 340
GW E K G +GK L+
Sbjct: 211 GWQKETKAGVVKGKTLL 227
Score = 62.5 bits (145), Expect = 2e-11
Identities = 29/34 (85%), Positives = 32/34 (94%)
Frame = +1
Query: 13 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVKQ 114
GEFEAGISK+GQTREHALLA+TLGVKQLIV V +
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNK 154
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 100 bits (239), Expect = 7e-23
Identities = 43/77 (55%), Positives = 59/77 (76%)
Frame = +2
Query: 110 NKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNSAAVAFVPISGWHGDNMLEPSTKMPWFK 289
NKMD+T +S++RFEEI KE S++IKK+G+N V FVP+SG+ GDNM+EP+T MPW++
Sbjct: 153 NKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQ 210
Query: 290 GWLVERKEGKAEGKCLI 340
GW E K G +GK L+
Sbjct: 211 GWQKETKAGVVKGKTLL 227
Score = 62.5 bits (145), Expect = 2e-11
Identities = 29/34 (85%), Positives = 32/34 (94%)
Frame = +1
Query: 13 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVKQ 114
GEFEAGISK+GQTREHALLA+TLGVKQLIV V +
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNK 154
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 100 bits (239), Expect = 7e-23
Identities = 43/77 (55%), Positives = 59/77 (76%)
Frame = +2
Query: 110 NKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNSAAVAFVPISGWHGDNMLEPSTKMPWFK 289
NKMD+T +S++RFEEI KE S++IKK+G+N V FVP+SG+ GDNM+EP+T MPW++
Sbjct: 153 NKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQ 210
Query: 290 GWLVERKEGKAEGKCLI 340
GW E K G +GK L+
Sbjct: 211 GWQKETKAGVVKGKTLL 227
Score = 62.5 bits (145), Expect = 2e-11
Identities = 29/34 (85%), Positives = 32/34 (94%)
Frame = +1
Query: 13 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVKQ 114
GEFEAGISK+GQTREHALLA+TLGVKQLIV V +
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNK 154
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 47.6 bits (108), Expect = 5e-07
Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Frame = +2
Query: 110 NKMDSTEPPYSESRFEEIKKEVSSY-IKKIGYNSAAVAFVPISGWHGDNML--EPSTKMP 280
NK+D +SE RF+EIK VS + IK +G+ ++ V FVPIS G N++ + S
Sbjct: 323 NKLDLMS--WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYK 380
Query: 281 WFKG 292
W+KG
Sbjct: 381 WYKG 384
Score = 39.9 bits (89), Expect = 1e-04
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +1
Query: 10 EGEFEAGISKNGQTREHALLAFTLGVKQLIVGVKQ 114
+ FE G +NGQTREHA L LG+ +++V V +
Sbjct: 290 QNNFERGFLENGQTREHAYLLRALGISEIVVSVNK 324
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 45.2 bits (102), Expect = 3e-06
Identities = 19/34 (55%), Positives = 25/34 (73%)
Frame = +1
Query: 13 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVKQ 114
GEFEAG + GQTREHA+LA T G+ L+V + +
Sbjct: 352 GEFEAGFERGGQTREHAVLARTQGINHLVVVINK 385
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 30.7 bits (66), Expect = 0.065
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +1
Query: 46 QTREHALLAFTLGVKQLIVGVKQ 114
QTREH LLA +GVKQ++V + +
Sbjct: 156 QTREHLLLARQVGVKQIVVYINK 178
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 27.1 bits (57), Expect = 0.80
Identities = 12/46 (26%), Positives = 19/46 (41%)
Frame = -1
Query: 155 QIETHCMVAQWSPFCFTPTISCLTPSVKASRACSRVCPFFEIPASN 18
Q ETH + +W C+ + A+R S P F A++
Sbjct: 371 QAETHMEMLEWGSVINNAREHCINSGISANRILSPTLPSFSAKATS 416
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 26.6 bits (56), Expect = 1.1
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 123 PLSHHTVSLDLRKSRRKSLPTSRKLVTIRLPSLS 224
P S +++ +K +LPTS K++T PS+S
Sbjct: 402 PTSFPSLTSSTKKIPSTTLPTSSKMITTTTPSVS 435
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 25.8 bits (54), Expect = 1.8
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +3
Query: 168 RKSLPTSRKLVTIRLPSLSYPFLAGTEITCWSRPPKCHGSRDGWLSVKKE 317
R+S S + + LPS PF++ + + ++P G + KKE
Sbjct: 639 RRSFKPSEEAAKLSLPSRKNPFVSDSAVLKVNKPEMKEGQKKAEARKKKE 688
>SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 138
Score = 25.4 bits (53), Expect = 2.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 125 TEPPYSESRFEEIKKEVSSYIKK 193
+EPP + S +E+ KKE+ I+K
Sbjct: 9 SEPPVNVSYYEQCKKELHEMIEK 31
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 25.4 bits (53), Expect = 2.4
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +2
Query: 116 MDSTEPPYSESRFEEIKKEVSSYIKKIG----YNSAAVAFVPISGWHGDNMLEPSTKMPW 283
+D +P + F IKK+V Y+ ++ Y + A P+ G N LEP TK PW
Sbjct: 107 LDLKKPLLPQILFGNIKKDV--YLDQVHRPRHYRGSGSA--PLFG----NFLEPLTKTPW 158
Query: 284 F 286
+
Sbjct: 159 Y 159
>SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit
Tom40|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 25.0 bits (52), Expect = 3.2
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = -2
Query: 181 GRDFLLDFLKSRLTVWW---LSGVHFVSLLQSV 92
G+DF F + W+ L+G++ +SLLQSV
Sbjct: 144 GKDFSFSF--KAMNPWYEEKLTGIYIISLLQSV 174
>SPAC959.10 |sen15||tRNA-splicing endonuclease subunit
Sen15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 143
Score = 25.0 bits (52), Expect = 3.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 81 RSQATDCRSETKWTPLSHHTVSLDLRKSR 167
R+ TD R +W L H + +DL+ R
Sbjct: 25 RAVETDLRLGQRWCELKVHVLDIDLKTKR 53
>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 24.6 bits (51), Expect = 4.3
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 193 NWLQFGCRRFRTHFWLARR*HVGAVHQNA 279
NWLQ+ C+ F + RR H H +A
Sbjct: 21 NWLQYNCKAFNVGNF--RRKHASHSHDDA 47
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 24.6 bits (51), Expect = 4.3
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -3
Query: 171 SFLISSNRDSLY-GGSVESILFHSYNQLLDSECESEQSVFTRLSVL 37
S ++SS +Y GG+ S+ Y + C S S+FT ++L
Sbjct: 286 SLVVSSANPIIYTGGNDGSVRSWDYKTRIQESCISVSSLFTSKTLL 331
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 24.2 bits (50), Expect = 5.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 116 MDSTEPPYSESRFEEIKKEVSSYIKKIGYNSAA 214
MDST+ P R E + SY +K NSA+
Sbjct: 1555 MDSTKFPQPPERLEYTALRLRSYARKTLTNSAS 1587
>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 359
Score = 24.2 bits (50), Expect = 5.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 245 GDNMLEPSTKMPWFKGWLVERKEGK 319
GD +L + PW+ L+ RKE K
Sbjct: 53 GDRILVKAPGYPWWPALLLRRKETK 77
>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 708
Score = 24.2 bits (50), Expect = 5.6
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 174 TSFLISSNR-DSLYGGSVESILFHSYNQLLD 85
T +I N S YG VES++ HS N ++D
Sbjct: 403 TRTVIEKNSISSAYGPLVESLIAHSTNIMVD 433
>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 24.2 bits (50), Expect = 5.6
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +3
Query: 126 LSHHTVSLDLRKSRRKSLPTSRKLVTIRLPSLSYPFLAGTEITCWS 263
LS+ T L + KSL ++ +T R+ +L+ P++ +CW+
Sbjct: 414 LSNDTNKLAVYMGFYKSLQSAGAAITYRMDTLNIPYM-NYFASCWA 458
>SPAC17C9.02c |lys7||alpha-aminoadipate reductase
phosphopantetheinyl transferase Lys7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 24.2 bits (50), Expect = 5.6
Identities = 15/64 (23%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = -3
Query: 267 DGSNMLSPCQPEMGTKATAAEL*PIFLM*EETSFLISSNRDSLYGGSVESIL-FHSYNQL 91
D ++ +PC+ ++ K++ + + FL+ ++ + L G ++ ++ FH N+L
Sbjct: 142 DFMSVFTPCEWKL-IKSSISSIDVFFLLWTCKEAILKALGIGLSGNPLDIVVTFHKLNEL 200
Query: 90 LDSE 79
L+SE
Sbjct: 201 LNSE 204
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 23.8 bits (49), Expect = 7.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -1
Query: 119 PFCFTPTISCLTPSVKASRACS 54
PFCFTP + LT + A +
Sbjct: 365 PFCFTPNLEKLTIPYSVTEAAN 386
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 23.4 bits (48), Expect = 9.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 138 TVSLDLRKSRRKSLPTSRKLVTIRLPSLSYPFL 236
T+ +L + RK + + + RLPS+ PFL
Sbjct: 66 TLPRNLSRDARKQIEITINHLVSRLPSIVLPFL 98
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 23.4 bits (48), Expect = 9.8
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = +2
Query: 119 DSTEPPYSESRFEEIKKEVSSYIKKI 196
D P Y ++E +KK ++ I K+
Sbjct: 109 DVNTPEYQRMQWEALKKSINGLINKV 134
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,542,599
Number of Sequences: 5004
Number of extensions: 31502
Number of successful extensions: 130
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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