SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_A19
         (341 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0548 + 4099386-4099847,4100435-4101316                           92   9e-20
03_01_0547 + 4093196-4093657,4094267-4095148                           92   9e-20
03_01_0544 + 4082528-4082989,4083585-4084466                           92   9e-20
03_01_0543 + 4076981-4077442,4078145-4079026                           92   9e-20
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623...    51   3e-07
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299...    48   3e-06
02_03_0105 - 15254959-15255216,15256235-15256299,15257080-152572...    46   6e-06
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165...    40   4e-04
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558...    40   4e-04
02_04_0064 - 19375497-19375580,19375659-19375733,19376359-193765...    31   0.31 
06_03_1231 + 28580006-28580934,28581810-28582086                       28   1.7  
06_03_0748 - 24126603-24128038,24128582-24128897                       27   2.9  
02_05_1276 + 35397948-35398298,35398937-35401738,35402085-354023...    27   2.9  
03_04_0206 - 18493178-18495310                                         27   3.9  
01_04_0043 + 15375459-15377606                                         27   3.9  
01_01_0126 - 1159370-1159657,1161665-1161811,1162832-1162891,116...    27   3.9  
12_01_0314 - 2395113-2395760,2396151-2396738,2397218-2397252,239...    27   5.1  
09_04_0094 - 14552970-14553182,14553275-14553679,14553780-145539...    27   5.1  
01_01_0785 - 6076089-6077615                                           27   5.1  
08_02_0254 - 14879724-14880635                                         26   6.7  
03_03_0053 + 14109636-14109948,14110075-14110302,14112030-141121...    26   6.7  
02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875           26   6.7  
01_06_0474 + 29604201-29604527,29604634-29604988,29605071-296054...    26   6.7  
12_01_0346 + 2652181-2653566                                           26   8.9  
11_01_0438 - 3349506-3351239                                           26   8.9  
08_02_1457 + 27260841-27260965,27261126-27261246,27263455-272635...    26   8.9  

>03_01_0548 + 4099386-4099847,4100435-4101316
          Length = 447

 Score = 92.3 bits (219), Expect = 9e-20
 Identities = 38/61 (62%), Positives = 50/61 (81%)
 Frame = +2

Query: 110 NKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNSAAVAFVPISGWHGDNMLEPSTKMPWFK 289
           NKMD+T P YS++R++EI KEVSSY+KK+GYN   + FVPISG+ GDNM+E ST + W+K
Sbjct: 153 NKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYK 212

Query: 290 G 292
           G
Sbjct: 213 G 213



 Score = 56.4 bits (130), Expect = 6e-09
 Identities = 26/29 (89%), Positives = 28/29 (96%)
 Frame = +1

Query: 13  GEFEAGISKNGQTREHALLAFTLGVKQLI 99
           G FEAGISK+GQTREHALLAFTLGVKQ+I
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVKQMI 149


>03_01_0547 + 4093196-4093657,4094267-4095148
          Length = 447

 Score = 92.3 bits (219), Expect = 9e-20
 Identities = 38/61 (62%), Positives = 50/61 (81%)
 Frame = +2

Query: 110 NKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNSAAVAFVPISGWHGDNMLEPSTKMPWFK 289
           NKMD+T P YS++R++EI KEVSSY+KK+GYN   + FVPISG+ GDNM+E ST + W+K
Sbjct: 153 NKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYK 212

Query: 290 G 292
           G
Sbjct: 213 G 213



 Score = 56.4 bits (130), Expect = 6e-09
 Identities = 26/29 (89%), Positives = 28/29 (96%)
 Frame = +1

Query: 13  GEFEAGISKNGQTREHALLAFTLGVKQLI 99
           G FEAGISK+GQTREHALLAFTLGVKQ+I
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVKQMI 149


>03_01_0544 + 4082528-4082989,4083585-4084466
          Length = 447

 Score = 92.3 bits (219), Expect = 9e-20
 Identities = 38/61 (62%), Positives = 50/61 (81%)
 Frame = +2

Query: 110 NKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNSAAVAFVPISGWHGDNMLEPSTKMPWFK 289
           NKMD+T P YS++R++EI KEVSSY+KK+GYN   + FVPISG+ GDNM+E ST + W+K
Sbjct: 153 NKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYK 212

Query: 290 G 292
           G
Sbjct: 213 G 213



 Score = 56.4 bits (130), Expect = 6e-09
 Identities = 26/29 (89%), Positives = 28/29 (96%)
 Frame = +1

Query: 13  GEFEAGISKNGQTREHALLAFTLGVKQLI 99
           G FEAGISK+GQTREHALLAFTLGVKQ+I
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVKQMI 149


>03_01_0543 + 4076981-4077442,4078145-4079026
          Length = 447

 Score = 92.3 bits (219), Expect = 9e-20
 Identities = 38/61 (62%), Positives = 50/61 (81%)
 Frame = +2

Query: 110 NKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNSAAVAFVPISGWHGDNMLEPSTKMPWFK 289
           NKMD+T P YS++R++EI KEVSSY+KK+GYN   + FVPISG+ GDNM+E ST + W+K
Sbjct: 153 NKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYK 212

Query: 290 G 292
           G
Sbjct: 213 G 213



 Score = 56.4 bits (130), Expect = 6e-09
 Identities = 26/29 (89%), Positives = 28/29 (96%)
 Frame = +1

Query: 13  GEFEAGISKNGQTREHALLAFTLGVKQLI 99
           G FEAGISK+GQTREHALLAFTLGVKQ+I
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVKQMI 149


>04_04_1593 -
           34661670-34661798,34661882-34661989,34662129-34662368,
           34662614-34662782,34662872-34663362,34663681-34663991,
           34664396-34664473,34665034-34665228,34665363-34665524,
           34665759-34665840
          Length = 654

 Score = 50.8 bits (116), Expect = 3e-07
 Identities = 25/64 (39%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
 Frame = +2

Query: 110 NKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNSAAVAFVPISGWHGDNMLEPS--TKM-P 280
           NKMDS E  YS+ RF  IK ++ ++++  GY  +AVA+VPIS    +N++  +  T++  
Sbjct: 382 NKMDSVE--YSKERFNFIKSQLGAFLRSCGYKDSAVAWVPISAMENENLMTTASDTRLSS 439

Query: 281 WFKG 292
           W+ G
Sbjct: 440 WYDG 443



 Score = 33.5 bits (73), Expect = 0.044
 Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +1

Query: 13  GEFEAGISKNG--QTREHALLAFTLGVKQLIVGVKQ 114
           G FEAG+  NG  QT+EH+ L  + GV  LIV V +
Sbjct: 348 GSFEAGMGINGIGQTKEHSQLVRSFGVDNLIVVVNK 383


>04_03_0107 +
           11328267-11328276,11329059-11329170,11329862-11329907,
           11330185-11330256,11332292-11332303,11332880-11332942,
           11333038-11333192,11333303-11333367,11334645-11334795,
           11335230-11335335,11335440-11335575,11336310-11336374,
           11337003-11337188,11337298-11337399
          Length = 426

 Score = 47.6 bits (108), Expect = 3e-06
 Identities = 22/35 (62%), Positives = 26/35 (74%)
 Frame = +1

Query: 10  EGEFEAGISKNGQTREHALLAFTLGVKQLIVGVKQ 114
           +GEFE G  K GQTREH LLA TLGV +LIV + +
Sbjct: 111 KGEFETGYEKGGQTREHVLLAKTLGVAKLIVVINK 145



 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
 Frame = +2

Query: 110 NKMDSTEPPYSESRFEEIKKEVSSYIKKIGYN-SAAVAFVPISGWHGDNM 256
           NKMD     +S+ R++EI+ ++  +++  GYN    V F+PISG  G NM
Sbjct: 144 NKMDEPTVKWSKERYDEIESKMVPFLRSSGYNVKKDVHFLPISGLLGSNM 193


>02_03_0105 -
           15254959-15255216,15256235-15256299,15257080-15257215,
           15257314-15257419,15257642-15257792,15258817-15258881,
           15258980-15259134,15259219-15259281,15259846-15259917,
           15260364-15260408
          Length = 371

 Score = 46.4 bits (105), Expect = 6e-06
 Identities = 20/35 (57%), Positives = 26/35 (74%)
 Frame = +1

Query: 10  EGEFEAGISKNGQTREHALLAFTLGVKQLIVGVKQ 114
           +GEFE G  + GQTREH LLA TLGV +L+V + +
Sbjct: 66  KGEFETGYERGGQTREHVLLAKTLGVSKLVVVINK 100



 Score = 43.2 bits (97), Expect = 5e-05
 Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
 Frame = +2

Query: 110 NKMDSTEPPYSESRFEEIKKEVSSYIKKIGYN-SAAVAFVPISGWHGDNMLEPSTK--MP 280
           NKMD +   +S+ R++EI+ ++  ++K  GYN    V F+PISG  G NM     K    
Sbjct: 99  NKMDESTVGWSKERYDEIEGKMVPFLKSSGYNVKKDVHFLPISGLLGTNMKTRMDKSNCS 158

Query: 281 WFKG 292
           W+ G
Sbjct: 159 WWSG 162


>04_04_1015 -
           30115377-30115477,30115570-30115615,30116491-30116590,
           30116676-30116771,30119519-30119556,30119623-30119733,
           30119820-30119951,30120024-30120263,30120532-30120700,
           30120994-30121493,30121581-30121691,30121802-30122133,
           30122603-30122737,30122839-30122988,30123809-30123947
          Length = 799

 Score = 40.3 bits (90), Expect = 4e-04
 Identities = 20/65 (30%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
 Frame = +2

Query: 110 NKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNSAAVAFVPISGWHGDNMLE-PS--TKMP 280
           NKMD+    YS+ RFE IK ++ S+++   +  ++V ++P+S     N+++ PS      
Sbjct: 398 NKMDAIG--YSKERFEFIKVQLGSFLRSCNFKDSSVTWIPLSAVENQNLIKIPSDVRLTS 455

Query: 281 WFKGW 295
           W++G+
Sbjct: 456 WYQGF 460



 Score = 33.9 bits (74), Expect = 0.034
 Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 5/39 (12%)
 Frame = +1

Query: 13  GEFEAGISKNG-----QTREHALLAFTLGVKQLIVGVKQ 114
           G FEAG+   G     QT+EHA L  + GV+QLIV V +
Sbjct: 361 GSFEAGMDGEGGKSVGQTKEHAQLIRSFGVEQLIVAVNK 399


>04_04_1008 -
           30054674-30054774,30054867-30054912,30055788-30055887,
           30055973-30056068,30058816-30058853,30058920-30059030,
           30059117-30059248,30059321-30059560,30059829-30059997,
           30060291-30060790,30060878-30060988,30061099-30061430,
           30061900-30062034,30062136-30062285,30063106-30063244
          Length = 799

 Score = 40.3 bits (90), Expect = 4e-04
 Identities = 20/65 (30%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
 Frame = +2

Query: 110 NKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNSAAVAFVPISGWHGDNMLE-PS--TKMP 280
           NKMD+    YS+ RFE IK ++ S+++   +  ++V ++P+S     N+++ PS      
Sbjct: 398 NKMDAIG--YSKERFEFIKVQLGSFLRSCNFKDSSVTWIPLSAVENQNLIKIPSDVRLTS 455

Query: 281 WFKGW 295
           W++G+
Sbjct: 456 WYQGF 460



 Score = 33.9 bits (74), Expect = 0.034
 Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 5/39 (12%)
 Frame = +1

Query: 13  GEFEAGISKNG-----QTREHALLAFTLGVKQLIVGVKQ 114
           G FEAG+   G     QT+EHA L  + GV+QLIV V +
Sbjct: 361 GSFEAGMDGEGGKSVGQTKEHAQLIRSFGVEQLIVAVNK 399


>02_04_0064 -
           19375497-19375580,19375659-19375733,19376359-19376514,
           19377016-19377093,19377328-19377428,19377570-19377717,
           19378172-19378316,19378803-19378906,19380257-19380385,
           19380526-19380636,19380734-19380863,19381915-19382034,
           19382360-19382481,19382965-19383048,19383241-19383357,
           19383442-19383522,19384138-19384197,19384398-19384440,
           19384528-19384626,19385353-19385564,19385964-19386091,
           19386246-19386396
          Length = 825

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
 Frame = +2

Query: 116 MDSTEPPYSESRFEEIKKEVSSYIKKIGYNSAAV------AFVPISGWHGDNMLEPSTK 274
           M STEP  +   +   + EV   IKK+GYN+  +      A+    G+H  N   PS++
Sbjct: 322 MSSTEPKINT--YANFRDEVLPRIKKLGYNAVQIMAIQEHAYYGSFGYHVTNFFAPSSR 378


>06_03_1231 + 28580006-28580934,28581810-28582086
          Length = 401

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +3

Query: 177 LPTSRKLVTIRLPSLSYPFLAGTEITCWSRPPKCHGSRDGWLSVKKERLKVN 332
           LP + K+ TI +  L    +    +      P C G   GW+ + + RL +N
Sbjct: 79  LPANMKVSTIAVAPLDSIHIVAPNVNNRPSCPLCRGDVIGWIVIGEARLHLN 130


>06_03_0748 - 24126603-24128038,24128582-24128897
          Length = 583

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 137 YSESRFEEIKKEVSSYIKKIGYNSAAVAFVP 229
           +S  RF   KK++++ IK+I  +  A  FVP
Sbjct: 464 HSSERFHPSKKDINAKIKEIFVDIKAAGFVP 494


>02_05_1276 + 35397948-35398298,35398937-35401738,35402085-35402306,
            35402503-35402562,35402615-35402698,35402740-35402816,
            35403147-35403363
          Length = 1270

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 298  QPSLEPWHFGGRLQHVISVPARN 230
            QP L  W  GG    ++SVPA N
Sbjct: 1108 QPELTAWLVGGTALQIVSVPALN 1130


>03_04_0206 - 18493178-18495310
          Length = 710

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +2

Query: 110 NKMDSTEPPYSESRFEEIKKEV 175
           NK D T   Y +   EEIKKEV
Sbjct: 687 NKFDGTFEDYKDELLEEIKKEV 708


>01_04_0043 + 15375459-15377606
          Length = 715

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 232 NGYESDGSRIVTNFLDVGRDFLLDFLKSRLTVWWLSGVHF 113
           +G   +    V   ++    FL DFL S+LTV++ SG  F
Sbjct: 288 DGLLGESHERVFRVIETELSFLADFLYSKLTVFYASGWWF 327


>01_01_0126 -
           1159370-1159657,1161665-1161811,1162832-1162891,
           1163021-1163203,1163336-1163569
          Length = 303

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = +2

Query: 143 ESRFEEIKKEVSSYIKKIGYNSAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKA 322
           E R    KK ++   +++         + IS   G++  EPSTK P+F  + V+ +   A
Sbjct: 227 EGRLSWKKKILAFIFERVRIKVGPFGPLEISLGGGNDGREPSTKDPFFVWFYVDEEIAVA 286

Query: 323 EGK 331
           +G+
Sbjct: 287 QGR 289


>12_01_0314 -
           2395113-2395760,2396151-2396738,2397218-2397252,
           2397546-2397632,2397913-2397985,2398648-2398714,
           2398795-2398931,2400196-2400217,2400733-2400807,
           2402281-2402365,2402605-2403334
          Length = 848

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 225 YPFLAGTEITCWSRPPKCHGSRD 293
           Y F+    + CWSR P    SRD
Sbjct: 755 YVFILVLAMICWSRSPSAFSSRD 777


>09_04_0094 -
           14552970-14553182,14553275-14553679,14553780-14553902,
           14554156-14554367,14554486-14554514,14554661-14555166
          Length = 495

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 131 PPYSESRFEEIKKEVSSYIKKIGYNSAAVAFVPISG 238
           PP +++  +E ++ VSS+    G  +AA A VP  G
Sbjct: 52  PPPTDAALQEFRRWVSSHGADAGAGAAAPAAVPEGG 87


>01_01_0785 - 6076089-6077615
          Length = 508

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +3

Query: 117 WTPLSHHTVSLDLRKSRRKSLPTSRKLVTIRLPSLSYPFLAGTE--ITCWSRPPK 275
           W+P S   ++ +     + +   +R++V  R P+   P +AG E  +T W   PK
Sbjct: 342 WSPESGEPITAEKIAEMKYTQAVAREVVRHRPPATLVPHIAGEEFQLTEWYTIPK 396


>08_02_0254 - 14879724-14880635
          Length = 303

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 229 GYESDGSRIVTNFLDVGRDFLLDFLKSRLTVWWLSGVHFVSLL 101
           G  SDGS I    L+  +D   DF+   +++   S ++ V+LL
Sbjct: 20  GSLSDGSEIAVKMLEDTKDDAEDFINEVVSIGRTSHINVVTLL 62


>03_03_0053 +
           14109636-14109948,14110075-14110302,14112030-14112181,
           14112305-14112578,14112687-14112739
          Length = 339

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 229 GYESDGSRIVTNFLDVGRDFLLDFLKSRLTV 137
           G  SDG  IV    ++G  FL  FL+ R TV
Sbjct: 92  GRYSDGRLIVDFLAELGLPFLTPFLRGRETV 122


>02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875
          Length = 356

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +3

Query: 177 LPTSRKLVTIRLPSLSYPFLAGTEITCWSRPPKCHGSRDGWLSVKKERLKVN 332
           LPT+ K+ +     L    +  +  T     P C G   GW+ + + RL +N
Sbjct: 103 LPTNMKVPSFNGAPLDSIHIISSNTTDRPACPLCRGDVIGWVVIDEARLHLN 154


>01_06_0474 +
           29604201-29604527,29604634-29604988,29605071-29605411,
           29606502-29606940,29607558-29607913
          Length = 605

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 119 PFCFTPTISCLTPSVKASRACSRVCPFFEIPASNS 15
           P  FT T SC+ PS ++    SR C     P++++
Sbjct: 388 PNSFTSTSSCMAPSRRSMAVRSRSCSGRPTPSAHA 422


>12_01_0346 + 2652181-2653566
          Length = 461

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 315 PSLRSTNHPLNHGILVDGSNML 250
           P+  + +H L+HG L DG N+L
Sbjct: 214 PTAAAVSHGLHHGRLRDGGNVL 235


>11_01_0438 - 3349506-3351239
          Length = 577

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +2

Query: 131 PPYSESRFEEIKKEVSSYIKKIGYNSAAVAFVPISG 238
           PPY ++R + ++  + +   ++GY  AA     + G
Sbjct: 453 PPYFDARLDGVRPRLVAAPSEVGYGEAAAVRFEVPG 488


>08_02_1457 +
           27260841-27260965,27261126-27261246,27263455-27263543,
           27263776-27263860,27263970-27264074,27264446-27264527,
           27264573-27264686,27265029-27265330,27265519-27266114,
           27266216-27266376,27266489-27266592,27266697-27266856,
           27266942-27267105,27267213-27267545,27267640-27267930,
           27268276-27268359,27268430-27268563,27268665-27268892,
           27268993-27269164,27269263-27269517,27269778-27270047
          Length = 1324

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = +3

Query: 243 TEITCWSRPPKCHGSRDGWLSV---KKERLKVNA 335
           T  T W  PP  H    G+L +   KKERL V A
Sbjct: 14  TAETRWLSPPLTHDDNRGFLQMLREKKERLGVGA 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,181,659
Number of Sequences: 37544
Number of extensions: 208659
Number of successful extensions: 752
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -