Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_A18
(284 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 94 3e-21
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 91 2e-20
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 2.8
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 3.7
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 24 3.7
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 24 4.9
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 23 6.5
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce... 23 6.5
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 23 8.5
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 23 8.5
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 94.3 bits (224), Expect = 3e-21
Identities = 44/69 (63%), Positives = 53/69 (76%)
Frame = +1
Query: 73 IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 252
+VDPF+RKDWYD+KAP+ F + VG TLVNRT G K A++ LKGR+ EVSLADLQ D
Sbjct: 20 VVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ--KDE 77
Query: 253 ERSFRKFRL 279
E SFRK +L
Sbjct: 78 EHSFRKVKL 86
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 91.5 bits (217), Expect = 2e-20
Identities = 42/69 (60%), Positives = 53/69 (76%)
Frame = +1
Query: 73 IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 252
+VDPF+RK+WYD+KAP+ F + VG TLVNRT G K A++ LKGR+ EVSLADLQ D
Sbjct: 20 VVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ--KDE 77
Query: 253 ERSFRKFRL 279
E +FRK +L
Sbjct: 78 EHAFRKVKL 86
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 24.6 bits (51), Expect = 2.8
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 153 PCQSHPGNKNCI*GSKGACF 212
PC H K C G GACF
Sbjct: 347 PCGEHTCKKRCHSGLCGACF 366
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 24.2 bits (50), Expect = 3.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 181 IASEGLKGRVFEVSLADLQADSDAERSFRKFR 276
+ S GR + +AD DSD+ERS+R+ R
Sbjct: 351 VGSSSSHGRQQDSYIAD---DSDSERSYRRVR 379
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 24.2 bits (50), Expect = 3.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 194 PSDAIFVPWVRLTRVVPTCLLVNMDGALTSYQ 99
PSD+ F W +L R+V + + + LT YQ
Sbjct: 1905 PSDSTFPLWAKLPRLVISEDVQGISQPLTVYQ 1936
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 23.8 bits (49), Expect = 4.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 174 SLGAIDKGGAHLSLGEHGRRFNIVPVFT 91
+LGAID G LGE F + P F+
Sbjct: 858 NLGAIDSEGVLTKLGEQMSLFPLSPRFS 885
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 23.4 bits (48), Expect = 6.5
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = -2
Query: 262 KTFPHHYQPGDQQGRPQKH 206
+ FP H++PG+ P H
Sbjct: 195 REFPAHHEPGEHMPPPPMH 213
>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 23.4 bits (48), Expect = 6.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -3
Query: 120 RRFNIVPVFTGERINNLLLNTLLASFRKAFIFT 22
R N+V VF G+ + N LN + + +FT
Sbjct: 172 RTENVVKVFQGKNVKNDSLNLRVRVWITGIVFT 204
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 23.0 bits (47), Expect = 8.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 176 VPWVRLTRVVPTCLLVNMDGALTSYQ 99
V +RL R P L+N D TSY+
Sbjct: 222 VSLIRLERTQPILHLMNFDDYSTSYE 247
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 23.0 bits (47), Expect = 8.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 255 FRITISLEISKGDLKNTPL*TLRCNFCSLGAI 160
++ I L+ S +L TP + CNFC L A+
Sbjct: 204 YKCVICLD-SPENLSCTPCGHIFCNFCILSAL 234
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,078,033
Number of Sequences: 5004
Number of extensions: 19075
Number of successful extensions: 47
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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