Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_A18
(284 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 104 1e-23
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 103 2e-23
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 103 3e-23
11_01_0807 - 7178278-7178548,7178629-7178756,7178847-7179815,718... 29 0.76
05_07_0283 - 28937027-28937110,28937211-28937549,28937641-289377... 27 2.3
04_04_0201 - 23555336-23556008,23556097-23556258,23556353-235572... 27 2.3
01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267 27 3.1
09_02_0568 + 10748227-10748434,10749004-10749398 26 4.1
05_07_0329 - 29308867-29308932,29309040-29309159,29309245-293093... 26 4.1
02_05_0952 + 33022742-33023125 26 4.1
07_01_0373 + 2783596-2784933 25 7.1
05_05_0263 - 23673014-23673697,23673772-23674188 25 7.1
01_06_0454 - 29506637-29508175 25 7.1
12_01_0063 - 535364-536085,536226-536439,536989-537981,538238-53... 25 9.4
11_01_0061 - 456521-457389,457534-457659,458377-459307,459564-45... 25 9.4
10_06_0125 + 11020726-11020785,11021872-11022198,11022589-11023041 25 9.4
06_03_1516 + 30712208-30712780,30712984-30713139,30713819-307139... 25 9.4
01_01_1106 + 8750597-8754031 25 9.4
01_01_0720 - 5593311-5595371,5597550-5598027,5598118-5598146 25 9.4
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 104 bits (249), Expect = 1e-23
Identities = 50/68 (73%), Positives = 57/68 (83%)
Frame = +1
Query: 76 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 255
VDPF +KDWYD+KAPS+F R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 256 RSFRKFRL 279
+++RK RL
Sbjct: 79 QAYRKIRL 86
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 103 bits (248), Expect = 2e-23
Identities = 49/68 (72%), Positives = 57/68 (83%)
Frame = +1
Query: 76 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 255
VDPF +KDWYD+KAPS+F R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 256 RSFRKFRL 279
+++RK RL
Sbjct: 79 QAYRKIRL 86
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 103 bits (246), Expect = 3e-23
Identities = 48/68 (70%), Positives = 59/68 (86%)
Frame = +1
Query: 76 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 255
VDPF++KDWYD+KAP++F+ R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 256 RSFRKFRL 279
+++RK RL
Sbjct: 79 QAYRKVRL 86
>11_01_0807 -
7178278-7178548,7178629-7178756,7178847-7179815,
7180465-7180518,7180622-7180798,7180913-7181926,
7182038-7182101,7182247-7182563,7182797-7182847
Length = 1014
Score = 28.7 bits (61), Expect = 0.76
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 101 GTMLKRRPCSPRDKWAPPLSIAP 169
G + R PC PRDK+ P S+ P
Sbjct: 206 GAYIVRLPCGPRDKYLPKESLWP 228
>05_07_0283 -
28937027-28937110,28937211-28937549,28937641-28937754,
28937843-28937955,28939050-28939087,28939315-28939478,
28939746-28939794,28940986-28941152
Length = 355
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 148 TTLVNRTQGTKIASEGLKGRVFEV 219
TT+VN + K+A EG+KG ++V
Sbjct: 17 TTIVNLAEEAKLAREGVKGPGYQV 40
>04_04_0201 -
23555336-23556008,23556097-23556258,23556353-23557206,
23557452-23557613,23558197-23558649,23559729-23559788,
23559983-23560058,23561546-23561593,23561948-23562022,
23562067-23562494
Length = 996
Score = 27.1 bits (57), Expect = 2.3
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -3
Query: 165 AIDKGGAHLSLGEHG-RRFNIVPVFTGERINNLLLNTLLASFRKAFIFTSCRIPAA 1
A+D GG S GE G RR N++P N L + LA +I + AA
Sbjct: 127 AVDGGGELSSAGEGGQRRVNLLPTKILSAYENHLFSQALACREDEWIIEKLAVIAA 182
>01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267
Length = 769
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -2
Query: 256 FPHHYQPGDQQGRPQKHAPLDPQMQFLFPG 167
+P+ P D P++H PLD +Q + G
Sbjct: 386 YPYVSNPEDPNHEPRQHEPLDSDVQVIDEG 415
>09_02_0568 + 10748227-10748434,10749004-10749398
Length = 200
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 104 TMLKRRPCSPRDKWAPPLSIAPREQK 181
T+ KR+P RDK P++ AP +K
Sbjct: 163 TVAKRKPLQGRDKVGIPITPAPSNEK 188
>05_07_0329 - 29308867-29308932,29309040-29309159,29309245-29309364,
29309566-29310123,29310199-29310258,29310839-29310904,
29310993-29311103,29311167-29311257,29311349-29311449,
29311534-29311641,29311737-29314205
Length = 1289
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 157 VNRTQGTKIASEGLKGRVFEVSLADLQADSDAER 258
+ QG KI+++GL+ + +L L+ D D +R
Sbjct: 991 IRAAQGVKISAQGLEHAIAGTALYVLKPDDDLDR 1024
>02_05_0952 + 33022742-33023125
Length = 127
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -3
Query: 216 LKNTPL*TLRCNFCSLGAIDKGGAHLSLGEH-GRR 115
++ P T RC +G + KG HLS+ GRR
Sbjct: 56 IERGPQLTCRCRRRFMGGVGKGAPHLSMARRKGRR 90
>07_01_0373 + 2783596-2784933
Length = 445
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -2
Query: 250 HHYQPGDQQGRPQKHAPLD-PQMQFLF 173
HH Q QQ + APLD P + FLF
Sbjct: 385 HHQQQQQQQQLQRLSAPLDAPNIPFLF 411
>05_05_0263 - 23673014-23673697,23673772-23674188
Length = 366
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +2
Query: 122 PCSPRDKWAPPLSIAPRE 175
PCS KW PP + A E
Sbjct: 323 PCSDNGKWLPPAAAAAAE 340
>01_06_0454 - 29506637-29508175
Length = 512
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -3
Query: 147 AHLSLGEHGRRFNIVPVFTGERINNLLLNTLLASFR 40
AH G G RF + V G+R+ +L + A R
Sbjct: 21 AHRLCGAGGDRFEVAVVEAGDRVGGRILTSEFAGHR 56
>12_01_0063 -
535364-536085,536226-536439,536989-537981,538238-538255,
538601-538860,539950-540073,540978-541310,541447-541531,
541683-541768,541843-541941,542041-542180,542717-543043,
543163-543774,543887-543971,543972-544067,544147-544500,
544536-544559,544597-544707,544811-544894,545468-545546,
546122-546279,546412-546528,546622-546780,546857-546939,
547525-547627,549184-549495
Length = 1925
Score = 25.0 bits (52), Expect = 9.4
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2
Query: 107 MLKRRPCSPRDKWAPPLSIAP 169
++K PC+ ++ W P S+AP
Sbjct: 125 VIKISPCARKECWIDPFSMAP 145
>11_01_0061 -
456521-457389,457534-457659,458377-459307,459564-459581,
459924-460183,461834-461918,462587-462919,463053-463137,
463289-463374,463455-463556,463656-463795,464332-464658,
464778-465389,465502-465586,465587-465682,465762-466115,
466212-466322,466426-466509,467086-467164,467742-467899,
468034-468150,468240-468398,468475-468557,469098-469200,
470784-471080
Length = 1899
Score = 25.0 bits (52), Expect = 9.4
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2
Query: 107 MLKRRPCSPRDKWAPPLSIAP 169
++K PC+ ++ W P S+AP
Sbjct: 120 VIKISPCARKECWIDPFSMAP 140
>10_06_0125 + 11020726-11020785,11021872-11022198,11022589-11023041
Length = 279
Score = 25.0 bits (52), Expect = 9.4
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 153 GGAHLSLGEHGRRFNIVPVFTGERINNLLLNTLLASFRKAF 31
G + LG H V TG +I N + LLAS+ + F
Sbjct: 199 GLVDIMLGAHIPGVRATEVLTGAKIFNAAITPLLASWTERF 239
>06_03_1516 +
30712208-30712780,30712984-30713139,30713819-30713985,
30714108-30714357,30714400-30715182,30715437-30715753,
30715775-30716036
Length = 835
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = -2
Query: 268 CGKTFPHHYQPGDQQGRPQKHAPLDPQMQFLFPGCD 161
C + P PGD+ P H P+ +Q L P D
Sbjct: 578 CHEELPD-VMPGDEDLPPVNHIPIPDPVQLLAPQVD 612
>01_01_1106 + 8750597-8754031
Length = 1144
Score = 25.0 bits (52), Expect = 9.4
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +2
Query: 131 PRDKWAPPLSIAPREQKLHLRV*RGVF-LRSPLLISR 238
P PPL P Q LHLR GV + S +L+ R
Sbjct: 882 PNCSCLPPLRHIPYLQSLHLRYMAGVHSMSSEILVKR 918
>01_01_0720 - 5593311-5595371,5597550-5598027,5598118-5598146
Length = 855
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = -2
Query: 256 FPHHYQPGDQQGRPQKHAPLDPQMQFLFPG 167
+P+ P + P++H PLD +Q + G
Sbjct: 386 YPYVSNPEEPNHEPRQHEPLDSDVQVIDEG 415
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,398,616
Number of Sequences: 37544
Number of extensions: 142608
Number of successful extensions: 372
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 291966432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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