Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_A17
(458 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G9.04 |ssu72||phosphoric ester hydrolase |Schizosaccharomyc... 28 0.60
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 28 0.79
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 27 1.0
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 27 1.4
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 27 1.8
SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex s... 26 2.4
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe... 26 2.4
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 26 3.2
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 4.2
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 25 5.6
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||... 25 5.6
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch... 25 5.6
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 25 5.6
SPBC16E9.05 |erg6||delta-sterol C-methyltransferase |Schizosacch... 25 7.3
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 25 7.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 7.3
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 24 9.7
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 24 9.7
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 24 9.7
>SPAC3G9.04 |ssu72||phosphoric ester hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 197
Score = 28.3 bits (60), Expect = 0.60
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +1
Query: 274 DIPYKNNHEQEKTIGDREISNICKEPTEAKIKTPEIF 384
++ K+NHE E ++G + I ++ + TEA+ K E+F
Sbjct: 139 NVDIKDNHE-EASVGGKAILDLVNKLTEAQDKLEELF 174
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 27.9 bits (59), Expect = 0.79
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Frame = +1
Query: 223 EEPNKN-KDKYEKIEQNSDIPYKNNHEQEKTIGDREISNICKEP-----TEAKIKTPEIF 384
+EP K+ KD EK+E+ +++ K +E E + +EP E + E
Sbjct: 384 DEPQKDSKDDSEKVEKETEVERKEENEAEAEAVFDDWEAALEEPEVAENNEVVTEKKETD 443
Query: 385 IQSDSVE 405
I+SD+VE
Sbjct: 444 IKSDAVE 450
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 27.5 bits (58), Expect = 1.0
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +1
Query: 163 STQLLHERAMARFYFAIAMREEPNKNKDKYEKIEQNSDIPYKNNHEQEKT 312
S ++++ A F F M+E +KY KIE NS+I +++ E++ +
Sbjct: 29 SAEIIYFHAETTFLFEKIMKE--GNELEKYSKIELNSEI-WEDEEEEDNS 75
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 27.1 bits (57), Expect = 1.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 364 IKTPEIFIQSDSVEFTNYTLGSHRNSGDA 450
+K P F D+ + T+ +LGSH N A
Sbjct: 839 VKPPPFFDAPDNFQITHTSLGSHANENTA 867
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 26.6 bits (56), Expect = 1.8
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +1
Query: 250 YEKIEQNSDIPYKNNHEQEKTIGDREISNICKEPTEAKIKTPEIFIQSDSVEFTNY 417
+EK E K N +E+++ E I +E ++KTPE+ +E T +
Sbjct: 904 FEKAESLKIFREKANAMKERSLSYEECLAIVEEGESLQLKTPELLYFKQYMEKTEW 959
>SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex
subunit Rpa43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 26.2 bits (55), Expect = 2.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 5 NSARGLKKRTPVQRESPFSWIWI 73
++ R L+K V +SPFS+IW+
Sbjct: 52 DNIRFLEKSAKVMYDSPFSFIWV 74
>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 520
Score = 26.2 bits (55), Expect = 2.4
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +1
Query: 223 EEPNKNKDKYEKIEQNSD-IPYKNNHEQ 303
++PN + K+E I N D I Y +N EQ
Sbjct: 11 QKPNLQQQKFEAINANEDQIDYSSNLEQ 38
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 25.8 bits (54), Expect = 3.2
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +1
Query: 208 AIAMREEPNKNKDKYEKIE---QNSDIPYKNNHEQEKTI 315
A+A +EE NKN D I +S IP + N E+E I
Sbjct: 344 AVASKEEVNKNTDFRVSISYFPSSSSIPDECNTEEESRI 382
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 25.4 bits (53), Expect = 4.2
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +1
Query: 220 REEPNKNKDKYEKIEQNSDIPYKNNHEQEKTIGDREISN 336
R+E +KN D Y+++ N++ + E IG ++ N
Sbjct: 41 RKEKDKNSDAYDEMLLNNNFTLLDQEEPMVEIGSKKSRN 79
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 25.0 bits (52), Expect = 5.6
Identities = 15/54 (27%), Positives = 30/54 (55%)
Frame = +1
Query: 220 REEPNKNKDKYEKIEQNSDIPYKNNHEQEKTIGDREISNICKEPTEAKIKTPEI 381
R+E + K+ +KIE+ S Y H + ++G I+N+ ++ E + +PE+
Sbjct: 531 RQEELRRKEAMQKIEEQSKRDYDKLHGEGHSLG---INNV-RKVDELQSLSPEM 580
>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 25.0 bits (52), Expect = 5.6
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +1
Query: 286 KNNHEQEKTIGDREISNICKEPTEAKIKTPEIFIQS 393
KN + + KTIG ++ ++ K+ E + + E+F+Q+
Sbjct: 408 KNRNWRLKTIGMQKAEDVKKQDIERQERDYELFLQN 443
>SPAC29B12.10c |||OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 25.0 bits (52), Expect = 5.6
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +1
Query: 268 NSDIPYKNNHEQEKTI-GDREISNICKEPTEAKIKTPEIFIQSDSVEFTNYTLGSHRN 438
++ IP E + GD + + T+ KT F QS S E T+ G+H N
Sbjct: 6 SASIPTSIRKTSENEVSGDETPAGVGNLSTKTASKTSLTFRQSSSDESTSSYSGNHHN 63
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 25.0 bits (52), Expect = 5.6
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = +1
Query: 223 EEPNKNKDKYEKIEQNSDIPYKNNHEQEKTIGDREISNICKEPT 354
++ N N+ YE ++++ D H EK + + + + + +PT
Sbjct: 1405 QQRNANQALYENLKRDYDRLNLEKHNLEKQVNELKGAEVSPQPT 1448
>SPBC16E9.05 |erg6||delta-sterol C-methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 24.6 bits (51), Expect = 7.3
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 390 LYEYFWCFNFSFSRLF 343
LYEY W +F FSR +
Sbjct: 85 LYEYGWSQSFHFSRFY 100
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 24.6 bits (51), Expect = 7.3
Identities = 15/60 (25%), Positives = 26/60 (43%)
Frame = +1
Query: 223 EEPNKNKDKYEKIEQNSDIPYKNNHEQEKTIGDREISNICKEPTEAKIKTPEIFIQSDSV 402
EE + K KY+ E N + Y EKTI ++ + + K+ + +S S+
Sbjct: 259 EEISIKKVKYDPHETNKESEYNLIGSSEKTIDITDLLDSIPMNEQLKVSLKPLVSESSSI 318
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.6 bits (51), Expect = 7.3
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +1
Query: 226 EPNKNKDKYEKIEQNSDIPYKNNHEQ-EKTIGDREISNICKEPTEAKI 366
EP + EK ++N D+ + EQ E+ I E I AK+
Sbjct: 388 EPEDQDEPSEKDDENKDVEEEQEQEQEEEQIDPEEAKRIALRERMAKM 435
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 24.2 bits (50), Expect = 9.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 223 EEPNKNKDKYEKIEQNSDIPYKNNHEQEKTIGDRE 327
EE +++D YE+ E+N D + E E D E
Sbjct: 34 EELPQDEDDYEQEEENEDADQNTSVESESEELDNE 68
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 24.2 bits (50), Expect = 9.7
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -2
Query: 274 HCFVQSFHIYPCFYLALLS*QW 209
H F +HIY C + LL W
Sbjct: 458 HHFHWGYHIYACAVIGLLDPSW 479
>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
Length = 957
Score = 24.2 bits (50), Expect = 9.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 241 KDKYEKIEQNSDIPYKNNHEQEKTIGDREIS 333
KDK+EK ++ + P E+EK D E S
Sbjct: 121 KDKFEKDKRAAVCPTTTKSEEEKLENDFEYS 151
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.129 0.357
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,878,003
Number of Sequences: 5004
Number of extensions: 35773
Number of successful extensions: 111
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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