Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_A16
         (200 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    52   1e-08
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch...    25   1.0  
SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyc...    24   2.4  
SPBC32H8.05 |||conserved fungal protein|Schizosaccharomyces pomb...    24   3.2  
SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein L30|Sc...    23   4.2  

>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 52.0 bits (119), Expect = 1e-08
 Identities = 20/31 (64%), Positives = 29/31 (93%)
 Frame = +2

Query: 101 PVVDILGDEMTRIIWDLIKEKLILPFLDIEL 193
           PVV++ GDEMTR+IW +I+EKL+LP++DI+L
Sbjct: 19  PVVEMDGDEMTRVIWKIIREKLVLPYMDIKL 49


>SPAC4F10.18 |||WD repeat protein, human NUP37
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 71  IYNMSKIKAGPVVDILGDEMTRIIWDLIKEKLIL 172
           +Y+     A  V+  +GD+ T IIW L  E  IL
Sbjct: 145 VYSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL 178


>SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 300

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -3

Query: 123 SPKISTTGPALIFD--MLYILVR*FNK 49
           +PK+ TTGP L+F   M   L+  F+K
Sbjct: 271 TPKLLTTGPKLVFSFTMAQTLIPFFDK 297


>SPBC32H8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 117

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -3

Query: 171 KISFSLIRSQIILVISSPKISTTGP 97
           ++S S +   + + +  PK+ST+GP
Sbjct: 62  EVSSSEVSDNVGMEVDQPKVSTSGP 86


>SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 189 SISKKGKISFSLIRSQIILVISSPK 115
           ++SKKGK S   I S++ L + S K
Sbjct: 12  AVSKKGKKSGDTINSKLALTMKSGK 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 821,226
Number of Sequences: 5004
Number of extensions: 13450
Number of successful extensions: 32
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 46
effective length of database: 2,132,294
effective search space used: 42645880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)