Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_A16
(200 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0109 - 26526691-26526775,26526894-26527019,26527228-265273... 52 8e-08
05_07_0194 + 28327328-28327376,28327699-28327742,28327852-283279... 50 3e-07
01_01_1031 + 8169505-8169553,8169831-8169905,8170395-8170438,817... 44 1e-05
11_04_0097 + 13448740-13450725 29 0.68
06_03_0592 + 22585546-22588573,22588680-22589032 29 0.68
06_03_0590 + 22574985-22578018,22578125-22578469,22579171-225792... 28 0.90
01_06_1528 + 38011391-38011635,38012366-38012566,38012659-380128... 26 3.6
04_03_0691 - 18756812-18756883,18757453-18757590,18758017-187583... 25 8.4
>01_06_0109 -
26526691-26526775,26526894-26527019,26527228-26527370,
26527521-26527555,26527676-26527791,26527868-26527936,
26528070-26528173,26528253-26528338,26528429-26528530,
26528609-26528662,26528763-26528840,26528936-26528973,
26529235-26529344,26529463-26529506,26530232-26530280
Length = 412
Score = 51.6 bits (118), Expect = 8e-08
Identities = 23/37 (62%), Positives = 30/37 (81%), Gaps = 1/37 (2%)
Frame = +2
Query: 86 KIK-AGPVVDILGDEMTRIIWDLIKEKLILPFLDIEL 193
KIK A P+V++ GDEMTRI W IK+KLI PFLD+++
Sbjct: 5 KIKVANPIVEMDGDEMTRIFWQSIKDKLIFPFLDLDI 41
>05_07_0194 +
28327328-28327376,28327699-28327742,28327852-28327961,
28328250-28328287,28328371-28328448,28328527-28328580,
28328663-28328764,28329152-28329237,28329327-28329430,
28329542-28329610,28329689-28329804,28329949-28329983,
28330152-28330294,28330473-28330598,28330700-28330784
Length = 412
Score = 49.6 bits (113), Expect = 3e-07
Identities = 21/38 (55%), Positives = 31/38 (81%), Gaps = 1/38 (2%)
Frame = +2
Query: 83 SKIK-AGPVVDILGDEMTRIIWDLIKEKLILPFLDIEL 193
+KIK A P+V++ GDEMTR+ W IK+KLI PFL++++
Sbjct: 4 TKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDI 41
>01_01_1031 +
8169505-8169553,8169831-8169905,8170395-8170438,
8170633-8170742,8170960-8170997,8171055-8171186,
8171298-8171351,8171424-8171525,8172679-8172764,
8172870-8172973,8173056-8173124,8173156-8173209,
8173210-8173325,8173420-8173454,8173637-8173779,
8174105-8174227,8174305-8174398
Length = 475
Score = 44.4 bits (100), Expect = 1e-05
Identities = 17/25 (68%), Positives = 22/25 (88%)
Frame = +2
Query: 119 GDEMTRIIWDLIKEKLILPFLDIEL 193
GDEMTR+IW IK+KLI PFLD+++
Sbjct: 42 GDEMTRVIWKWIKDKLIFPFLDLDI 66
>11_04_0097 + 13448740-13450725
Length = 661
Score = 28.7 bits (61), Expect = 0.68
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 3 LQEFVTRRSLGVYFTIY*IILQEYTTCRRLRPDLSL 110
L FVT+ S+ Y ++LQ Y CR RPD +L
Sbjct: 159 LHRFVTQASVAPTVATYNLLLQAYCDCR--RPDTAL 192
>06_03_0592 + 22585546-22588573,22588680-22589032
Length = 1126
Score = 28.7 bits (61), Expect = 0.68
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 50 LLNYLTRIYNMSKIKAGPVVDILGDEMTRIIW-DLIK 157
+L+Y+ RIY M +++A P + D + I + D++K
Sbjct: 782 ILSYVVRIYGMKEMQANPHCQQINDHVKNITYQDIVK 818
>06_03_0590 +
22574985-22578018,22578125-22578469,22579171-22579217,
22579450-22579573,22579622-22579686
Length = 1204
Score = 28.3 bits (60), Expect = 0.90
Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 50 LLNYLTRIYNMSKIKAGPVVDILGDEMTRIIW-DLIK 157
+L+Y+ RIY +++A P ++ + M I + D++K
Sbjct: 784 ILSYVVRIYRRKEMQANPHCQLISEHMKNITYQDIVK 820
>01_06_1528 +
38011391-38011635,38012366-38012566,38012659-38012836,
38012946-38013208,38013380-38013649,38013753-38014950
Length = 784
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 32 GCIFHYLLNYLTRIYNMSKIKAGPVVDIL 118
G +F++LLN + R+Y+ K P IL
Sbjct: 367 GALFNFLLNRILRVYSYINEKGAPYKIIL 395
>04_03_0691 -
18756812-18756883,18757453-18757590,18758017-18758308,
18758485-18758648,18759159-18759434,18759512-18759718,
18760303-18760475,18761978-18762139,18762561-18762720
Length = 547
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Frame = +2
Query: 59 YLTRIYNMSK--IKAGPVVDILGDEMTRII 142
+LT + +SK +K+ PVVDI GD++ II
Sbjct: 256 FLTMLLLLSKYRMKSLPVVDIGGDKIENII 285
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,844,989
Number of Sequences: 37544
Number of extensions: 70155
Number of successful extensions: 152
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 14,793,348
effective HSP length: 46
effective length of database: 13,066,324
effective search space used: 261326480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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