Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_A14
         (413 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...    63   2e-11
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S...    63   2e-11
SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S...    26   2.7  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   4.7  
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    25   4.7  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    25   6.1  
SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces p...    24   8.1  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    24   8.1  

>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score = 62.9 bits (146), Expect = 2e-11
 Identities = 36/72 (50%), Positives = 47/72 (65%)
 Frame = +2

Query: 197 LFMSRINRPPISLSRLAAT*RSLPQG*RCRRRDKLDGRGSNDVRLYTVPKMTVAALHVTE 376
           LF S+ NRPPIS+S++AA   S        +   + G  ++D RL TVPK++VAAL  T+
Sbjct: 51  LFQSKTNRPPISISKIAAL-TSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTK 109

Query: 377 KARARILAAGGE 412
            ARARIL AGGE
Sbjct: 110 SARARILKAGGE 121


>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 62.9 bits (146), Expect = 2e-11
 Identities = 34/72 (47%), Positives = 47/72 (65%)
 Frame = +2

Query: 197 LFMSRINRPPISLSRLAAT*RSLPQG*RCRRRDKLDGRGSNDVRLYTVPKMTVAALHVTE 376
           LF S+ NRPPIS+S++AA   S        +   + G  ++D R+ TVPK+++AAL  T+
Sbjct: 51  LFQSKTNRPPISISKIAAL-TSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTK 109

Query: 377 KARARILAAGGE 412
            ARARIL AGGE
Sbjct: 110 SARARILKAGGE 121


>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 207

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 188 RMIWLNLAFVRLAKYLYSFTN 126
           ++I  N  F  LAKYLYSFT+
Sbjct: 106 QVIEANGEFPELAKYLYSFTD 126


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 102  LNFGAPNFPVVFMIDVDTHLD 40
            LN+ + + PV+  I +D+HLD
Sbjct: 1170 LNWDSVDVPVIIKISLDSHLD 1190


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 287 VYSVNPAVGFFMWRPNGTKKSEV 219
           +YSV P     + RPNGTKK+ V
Sbjct: 101 LYSVEPVKINTLIRPNGTKKAFV 123


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 151 PSICTVLPIVSSTHPET*LRCAELSCRVYD 62
           P +CTVLPI+   +    +    + C++YD
Sbjct: 150 PHLCTVLPIMIPVYKWWQVPYFFVGCKIYD 179


>SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 402

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 302 RACPYVYSVNPAVGFFMWRPNGTKKSEVG*YG 207
           +AC Y Y+ +    F  +    TK SE G YG
Sbjct: 145 KACSYQYNFDTVGSFIDFAQTLTKWSESGVYG 176


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 180 DHPTEICL*AVSTDLRFLCPVWPP 251
           + PT  C+ +  +DL  L PV PP
Sbjct: 503 NEPTSFCIGSCGSDLLKLNPVHPP 526


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,647,556
Number of Sequences: 5004
Number of extensions: 29397
Number of successful extensions: 63
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)