Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_A14
         (413 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317...    58   3e-09
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844...    57   5e-09
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892...    55   2e-08
12_01_0417 - 3296066-3296356,3296491-3296541,3296657-3296862,329...    27   7.8  
02_03_0371 - 18267986-18268378                                         27   7.8  

>05_01_0401 +
           3169979-3169981,3170071-3170160,3170556-3170684,
           3170814-3170999,3172001-3172159
          Length = 188

 Score = 58.0 bits (134), Expect = 3e-09
 Identities = 34/72 (47%), Positives = 43/72 (59%)
 Frame = +2

Query: 197 LFMSRINRPPISLSRLAAT*RSLPQG*RCRRRDKLDGRGSNDVRLYTVPKMTVAALHVTE 376
           LFMS+ NRPP+SL RLA       +G        + G  ++D R+  +PKM V AL  TE
Sbjct: 52  LFMSKTNRPPLSLRRLA----KFMEGKEENNIAVIVGTVTDDKRIQEIPKMKVTALRFTE 107

Query: 377 KARARILAAGGE 412
            ARARI+ AGGE
Sbjct: 108 TARARIVNAGGE 119



 Score = 28.3 bits (60), Expect = 2.6
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +1

Query: 46  MGID-INHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRR 195
           MGID +    ++K +RT  +S DV               T + FN +IL+R
Sbjct: 1   MGIDLVAGGRNKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKR 51


>07_03_1667 +
           28484069-28484071,28484151-28484240,28484339-28484491,
           28484575-28484757,28486137-28486295
          Length = 195

 Score = 57.2 bits (132), Expect = 5e-09
 Identities = 34/75 (45%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
 Frame = +2

Query: 197 LFMSRINRPPISLSRLAAT*RSLPQG*RCRRRDKLD---GRGSNDVRLYTVPKMTVAALH 367
           LFMS+ NRPP+S+ RL                D++    G  ++D R+Y VP M VAAL 
Sbjct: 52  LFMSKTNRPPLSMRRLVRFMEGKVPDRHAISGDQIAVIVGTVTDDKRIYEVPAMKVAALR 111

Query: 368 VTEKARARILAAGGE 412
            TE ARARI+ AGGE
Sbjct: 112 FTETARARIINAGGE 126



 Score = 28.7 bits (61), Expect = 1.9
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 46  MGID-INHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRR 195
           MGID +    ++K +RT  +S+DV               T + FN +IL+R
Sbjct: 1   MGIDLVAGGRNKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKR 51


>03_02_0954 -
           12687373-12687582,12688885-12689067,12689160-12689288,
           12689375-12689464,12689548-12689550
          Length = 204

 Score = 55.2 bits (127), Expect = 2e-08
 Identities = 34/72 (47%), Positives = 44/72 (61%)
 Frame = +2

Query: 197 LFMSRINRPPISLSRLAAT*RSLPQG*RCRRRDKLDGRGSNDVRLYTVPKMTVAALHVTE 376
           LFMS+ NRPP+SL RL        +G +  +   + G  ++D R+Y VP M VAAL  TE
Sbjct: 52  LFMSKTNRPPLSLRRLVR----FMEG-KENQIAVIVGTVTDDKRVYEVPAMKVAALRFTE 106

Query: 377 KARARILAAGGE 412
            ARARI+  GGE
Sbjct: 107 TARARIVNTGGE 118



 Score = 30.3 bits (65), Expect = 0.64
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +1

Query: 46  MGID-INHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRR 195
           MGID +    ++K +RT  KS DV               T + FN +ILRR
Sbjct: 1   MGIDLVAGGRNKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRR 51


>12_01_0417 -
           3296066-3296356,3296491-3296541,3296657-3296862,
           3296944-3297237,3297335-3297533,3297620-3297679,
           3297786-3297975,3298112-3298245,3298339-3298602,
           3299158-3299344,3299476-3299540,3299622-3299776,
           3300650-3300735,3301240-3301478
          Length = 806

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 311 GSNDVRLYTVPKMTVAALHVTEKARARIL 397
           G+ND  LYT+PK  +  L +T  ++  +L
Sbjct: 340 GANDAMLYTLPKEELLELFLTVSSQLSLL 368


>02_03_0371 - 18267986-18268378
          Length = 130

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 49  GIDINHKHDRKVRRTEVKSQDV 114
           G+++NH+ D ++R  E  +QDV
Sbjct: 45  GVEVNHRGDEEIRVPEGPNQDV 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,252,957
Number of Sequences: 37544
Number of extensions: 205755
Number of successful extensions: 377
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)