Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_A14
(413 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18 pro... 62 9e-10
DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18 p... 62 9e-10
BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18 p... 62 9e-10
BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18 p... 62 9e-10
AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18 p... 62 9e-10
BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18 p... 60 4e-09
>L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 61.7 bits (143), Expect = 9e-10
Identities = 35/72 (48%), Positives = 47/72 (65%)
Frame = +2
Query: 197 LFMSRINRPPISLSRLAAT*RSLPQG*RCRRRDKLDGRGSNDVRLYTVPKMTVAALHVTE 376
LFMSR NRPP+SLSR+ R + R + + G ++DVR+ VPK+ V AL VT
Sbjct: 51 LFMSRTNRPPLSLSRMI---RKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTS 107
Query: 377 KARARILAAGGE 412
+AR+RIL AGG+
Sbjct: 108 RARSRILRAGGK 119
Score = 51.2 bits (117), Expect = 1e-06
Identities = 23/50 (46%), Positives = 29/50 (58%)
Frame = +1
Query: 46 MGIDINHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRR 195
MG+DI H DRKVRR E KSQD+ TN+ FNQ++L+R
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKR 50
>DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18
protein.
Length = 164
Score = 61.7 bits (143), Expect = 9e-10
Identities = 35/72 (48%), Positives = 47/72 (65%)
Frame = +2
Query: 197 LFMSRINRPPISLSRLAAT*RSLPQG*RCRRRDKLDGRGSNDVRLYTVPKMTVAALHVTE 376
LFMSR NRPP+SLSR+ R + R + + G ++DVR+ VPK+ V AL VT
Sbjct: 28 LFMSRTNRPPLSLSRMI---RKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTS 84
Query: 377 KARARILAAGGE 412
+AR+RIL AGG+
Sbjct: 85 RARSRILRAGGK 96
>BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 61.7 bits (143), Expect = 9e-10
Identities = 35/72 (48%), Positives = 47/72 (65%)
Frame = +2
Query: 197 LFMSRINRPPISLSRLAAT*RSLPQG*RCRRRDKLDGRGSNDVRLYTVPKMTVAALHVTE 376
LFMSR NRPP+SLSR+ R + R + + G ++DVR+ VPK+ V AL VT
Sbjct: 51 LFMSRTNRPPLSLSRMI---RKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTS 107
Query: 377 KARARILAAGGE 412
+AR+RIL AGG+
Sbjct: 108 RARSRILRAGGK 119
Score = 51.2 bits (117), Expect = 1e-06
Identities = 23/50 (46%), Positives = 29/50 (58%)
Frame = +1
Query: 46 MGIDINHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRR 195
MG+DI H DRKVRR E KSQD+ TN+ FNQ++L+R
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKR 50
>BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 61.7 bits (143), Expect = 9e-10
Identities = 35/72 (48%), Positives = 47/72 (65%)
Frame = +2
Query: 197 LFMSRINRPPISLSRLAAT*RSLPQG*RCRRRDKLDGRGSNDVRLYTVPKMTVAALHVTE 376
LFMSR NRPP+SLSR+ R + R + + G ++DVR+ VPK+ V AL VT
Sbjct: 51 LFMSRTNRPPLSLSRMI---RKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTS 107
Query: 377 KARARILAAGGE 412
+AR+RIL AGG+
Sbjct: 108 RARSRILRAGGK 119
Score = 51.2 bits (117), Expect = 1e-06
Identities = 23/50 (46%), Positives = 29/50 (58%)
Frame = +1
Query: 46 MGIDINHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRR 195
MG+DI H DRKVRR E KSQD+ TN+ FNQ++L+R
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKR 50
>AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 61.7 bits (143), Expect = 9e-10
Identities = 35/72 (48%), Positives = 47/72 (65%)
Frame = +2
Query: 197 LFMSRINRPPISLSRLAAT*RSLPQG*RCRRRDKLDGRGSNDVRLYTVPKMTVAALHVTE 376
LFMSR NRPP+SLSR+ R + R + + G ++DVR+ VPK+ V AL VT
Sbjct: 51 LFMSRTNRPPLSLSRMI---RKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTS 107
Query: 377 KARARILAAGGE 412
+AR+RIL AGG+
Sbjct: 108 RARSRILRAGGK 119
Score = 51.2 bits (117), Expect = 1e-06
Identities = 23/50 (46%), Positives = 29/50 (58%)
Frame = +1
Query: 46 MGIDINHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRR 195
MG+DI H DRKVRR E KSQD+ TN+ FNQ++L+R
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKR 50
>BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 59.7 bits (138), Expect = 4e-09
Identities = 34/72 (47%), Positives = 46/72 (63%)
Frame = +2
Query: 197 LFMSRINRPPISLSRLAAT*RSLPQG*RCRRRDKLDGRGSNDVRLYTVPKMTVAALHVTE 376
LFMSR NRPP+ LSR+ R + R + + G ++DVR+ VPK+ V AL VT
Sbjct: 51 LFMSRTNRPPLCLSRMI---RKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTS 107
Query: 377 KARARILAAGGE 412
+AR+RIL AGG+
Sbjct: 108 RARSRILRAGGK 119
Score = 51.2 bits (117), Expect = 1e-06
Identities = 23/50 (46%), Positives = 29/50 (58%)
Frame = +1
Query: 46 MGIDINHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRR 195
MG+DI H DRKVRR E KSQD+ TN+ FNQ++L+R
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKR 50
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,169,394
Number of Sequences: 237096
Number of extensions: 1108128
Number of successful extensions: 1656
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1650
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3087725076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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