Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_A13
(455 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 56 3e-09
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po... 48 9e-07
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 33 0.027
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 29 0.34
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy... 26 2.4
SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual 25 7.3
SPBC23E6.03c |nta1||protein N-terminal amidase Nta1 |Schizosacch... 25 7.3
SPAC1782.03 |||microfibrillar-associated protein family protein|... 24 9.6
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 24 9.6
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||... 24 9.6
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 56.0 bits (129), Expect = 3e-09
Identities = 35/132 (26%), Positives = 65/132 (49%)
Frame = +3
Query: 30 LRGGDLATQARVLQWASWADSELLPASCAWVFPYLGIMQFNKQNVERAKNXXXXXXXXXX 209
L G +A+VLQ+ S+ +SEL A + P + +++Q + A+
Sbjct: 82 LNGTTAEEKAKVLQYCSFTNSELPGAFRPIIAPRVFGAPYDEQAAKEAETAIALIFARFD 141
Query: 210 XXXXSRTFLVTERITLADIIVYSTLLHAFQHVLDPTVRSKLVNVQRWFLTVGHQPQVSSV 389
S+T+LV R+TLADI L +VL + +K ++ R++ T+ HQ ++ ++
Sbjct: 142 EELASKTYLVGSRLTLADIFFTCFLKFGATYVLTKSYLAKYTHIYRYYQTIYHQAKLDAI 201
Query: 390 VGEPVLCLAPPV 425
EP+ + P+
Sbjct: 202 T-EPLKFIDQPL 212
>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 220
Score = 47.6 bits (108), Expect = 9e-07
Identities = 26/113 (23%), Positives = 57/113 (50%), Gaps = 2/113 (1%)
Frame = +3
Query: 54 QARVLQWASWADSELL-PASCA-WVFPYLGIMQFNKQNVERAKNXXXXXXXXXXXXXXSR 227
+A +L+W + + +++ P + WV + G + + ++ + + R
Sbjct: 93 EAEMLKWMCFINFDIVTPQNVRPWVGMFRGNIPYEEKPFKESATRAIDSLKIPNELVKDR 152
Query: 228 TFLVTERITLADIIVYSTLLHAFQHVLDPTVRSKLVNVQRWFLTVGHQPQVSS 386
T+LV +R TLAD+ S L F ++D R +L ++ R+++T+ HQ ++ +
Sbjct: 153 TYLVGDRFTLADLFFGSLLRIFFNSIIDEKTRKELPHLTRYYITMFHQAKLET 205
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 32.7 bits (71), Expect = 0.027
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +3
Query: 222 SRTFLVTER-ITLADIIVYSTLLHAFQHVLDPTVRSKLVNVQRWFLTVGHQPQVSSVVGE 398
S TF+ + I++AD+ VY+ + H++ L KL NV RWF + HQ V
Sbjct: 134 SSTFIAQDSGISVADLAVYARI-HSYICGLSAKEGYKLNNVCRWFDFIQHQESVMEAANS 192
Query: 399 PVLCLA 416
+ LA
Sbjct: 193 MSMKLA 198
>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 29.1 bits (62), Expect = 0.34
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Frame = +1
Query: 31 CEVETWQHRH---VCCNGPHGLTVNC 99
C+ TW +H VCC+GP+ L +C
Sbjct: 11 CQFLTWNSKHNYIVCCSGPYLLGFSC 36
>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 370
Score = 26.2 bits (55), Expect = 2.4
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +2
Query: 110 LRMGLSIFRHHAVQQTECRACKE*FTGCTATSGWTSFEPHFPGHGEDYSCRYYRLQH 280
L G+S + + + FT +++ TSF F GHG D +Y R QH
Sbjct: 22 LHFGVSHMQGWRISMEDAHCALLNFTDSNSSNPPTSFFGVFDGHGGDRVAKYCR-QH 77
>SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual
Length = 484
Score = 24.6 bits (51), Expect = 7.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 352 NQRCTFTSLLRTVGSNTCWKACSSV 278
NQ CTF + + ++T K CSS+
Sbjct: 352 NQCCTFNPIFDELVNDTSTKNCSSI 376
>SPBC23E6.03c |nta1||protein N-terminal amidase Nta1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 286
Score = 24.6 bits (51), Expect = 7.3
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 366 HQPQVSSVVGEPVLCLA 416
HQ VSS V P++CL+
Sbjct: 182 HQQMVSSNVSRPIICLS 198
>SPAC1782.03 |||microfibrillar-associated protein family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 355
Score = 24.2 bits (50), Expect = 9.6
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +3
Query: 39 GDLATQARVLQWASWADSELLPASCAWVFPYLGIMQFN 152
GDL +A +W A+ + AW P I+Q N
Sbjct: 299 GDLFAKAGQTRWTHLANEDTTKEGSAWYDPKNPILQKN 336
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 24.2 bits (50), Expect = 9.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 299 LESMQQRAVDDNICKSNPLRDQESAAQKMSIQK 201
LES + A +D S +ES AQ+ +QK
Sbjct: 86 LESAESEAENDEESSSQKSNSKESHAQRKKLQK 118
>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 24.2 bits (50), Expect = 9.6
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +1
Query: 94 NCCRHPAHGSFHI 132
NCCRHP+ +I
Sbjct: 96 NCCRHPSEACLYI 108
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,067,679
Number of Sequences: 5004
Number of extensions: 41697
Number of successful extensions: 103
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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