Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_A13
(455 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 64 5e-11
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 60 8e-10
01_01_1176 - 9372879-9373097,9373814-9374278,9374372-9375447,937... 35 0.036
10_06_0131 - 11066033-11066251,11066548-11067012,11067102-110681... 33 0.082
10_01_0130 + 1540412-1541173 31 0.58
02_01_0615 - 4604373-4604537,4604618-4604707,4604871-4604989,460... 30 1.0
02_04_0542 - 23762549-23762961,23763051-23763453 29 1.8
04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114... 28 3.1
12_01_0564 - 4567650-4568063,4568154-4568624,4568722-4568923,457... 28 4.1
11_06_0584 - 25220371-25222917 27 5.4
09_04_0165 + 15274448-15277336 27 7.2
07_03_1697 - 28795521-28797328,28797430-28797550 27 9.5
02_05_1214 + 34976814-34979813 27 9.5
02_04_0266 - 21415912-21418563 27 9.5
>02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 64.1 bits (149), Expect = 5e-11
Identities = 34/128 (26%), Positives = 60/128 (46%)
Frame = +3
Query: 15 RHEDDLRGGDLATQARVLQWASWADSELLPASCAWVFPYLGIMQFNKQNVERAKNXXXXX 194
+ ++ L G L A + QW ++ +E+ + W+FP LG + + E A
Sbjct: 648 KSDNPLYGSSLIEYAHIEQWIDFSATEVDANTGKWLFPRLGFAPYVAVSEEAAIAALKRS 707
Query: 195 XXXXXXXXXSRTFLVTERITLADIIVYSTLLHAFQHVLDPTVRSKLVNVQRWFLTVGHQP 374
S T+LV +TLADI++ L F ++ S+ +V+R+F T+ +QP
Sbjct: 708 LGALNTHLASNTYLVGHSVTLADIVMTCNLYMGFARIMTKNFTSEFPHVERYFWTMVNQP 767
Query: 375 QVSSVVGE 398
V+G+
Sbjct: 768 NFKKVMGD 775
Score = 62.9 bits (146), Expect = 1e-10
Identities = 34/126 (26%), Positives = 60/126 (47%)
Frame = +3
Query: 21 EDDLRGGDLATQARVLQWASWADSELLPASCAWVFPYLGIMQFNKQNVERAKNXXXXXXX 200
++ L G L A + QW ++ +E+ W++P LGI + + E A
Sbjct: 89 DNPLYGSSLIEYAHIEQWNDFSATEVDANIGKWLYPRLGIAPYVAVSEEAAIAALKRSLG 148
Query: 201 XXXXXXXSRTFLVTERITLADIIVYSTLLHAFQHVLDPTVRSKLVNVQRWFLTVGHQPQV 380
S T+LV +TLADI++ L F ++ + S+ +V+R+F T+ +QP
Sbjct: 149 ALNTHLASNTYLVGHSVTLADIVMTCNLYMGFARIMTKSFTSEFPHVERYFWTMVNQPNF 208
Query: 381 SSVVGE 398
V+G+
Sbjct: 209 KKVLGD 214
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 60.1 bits (139), Expect = 8e-10
Identities = 33/129 (25%), Positives = 59/129 (45%)
Frame = +3
Query: 12 IRHEDDLRGGDLATQARVLQWASWADSELLPASCAWVFPYLGIMQFNKQNVERAKNXXXX 191
++ L G L + + QW ++ +E+ W++P LG + E A
Sbjct: 101 LKDNSSLCGSSLIDYSHIEQWMDFSATEVDANIGRWLYPRLGFGPYVPVLEEFAITSLKR 160
Query: 192 XXXXXXXXXXSRTFLVTERITLADIIVYSTLLHAFQHVLDPTVRSKLVNVQRWFLTVGHQ 371
S T+LV +TLADI++ L + F +L + S+ +V+R+F T+ +Q
Sbjct: 161 SLGALNTHLASNTYLVGHSVTLADIVMTCNLYYGFVRILIKSFTSEFPHVERYFWTMVNQ 220
Query: 372 PQVSSVVGE 398
P V+G+
Sbjct: 221 PNFKKVIGD 229
>01_01_1176 -
9372879-9373097,9373814-9374278,9374372-9375447,
9375534-9375687,9375783-9375879,9376238-9376374
Length = 715
Score = 34.7 bits (76), Expect = 0.036
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +3
Query: 222 SRTFLVTERITLADIIVYSTLLHAFQHVLDPTVRSKLVNVQRWFLTV 362
SRTFLV+ +++ADI+V+S L Q K N+ RWF ++
Sbjct: 108 SRTFLVSYGLSIADIVVWSNLAGTGQRWESLRRSKKYQNLVRWFNSI 154
>10_06_0131 -
11066033-11066251,11066548-11067012,11067102-11068177,
11068269-11068422,11068511-11068601,11069016-11069152
Length = 713
Score = 33.5 bits (73), Expect = 0.082
Identities = 19/44 (43%), Positives = 23/44 (52%)
Frame = +3
Query: 222 SRTFLVTERITLADIIVYSTLLHAFQHVLDPTVRSKLVNVQRWF 353
SRTFLV +T+ADI V+S L Q K N+ RWF
Sbjct: 106 SRTFLVGHVLTIADITVWSNLAGIGQRWESLRKSKKYQNLVRWF 149
>10_01_0130 + 1540412-1541173
Length = 253
Score = 30.7 bits (66), Expect = 0.58
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -2
Query: 226 RLKRCPSRSCSAASKSFFARSTFCLLNCMMPK 131
R +R PS + +AASK +FA FC+ PK
Sbjct: 203 RGRRRPSPAAAAASKMYFAFCPFCVAKAAQPK 234
>02_01_0615 -
4604373-4604537,4604618-4604707,4604871-4604989,
4605132-4605234,4605318-4605414,4605512-4605575,
4605673-4605805,4605899-4606143,4606263-4606439,
4607110-4607419
Length = 500
Score = 29.9 bits (64), Expect = 1.0
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -2
Query: 196 SAASKSFFARSTFCLLNCMMPKYGKTHAQDAGSSSLS 86
S++S+ FF +L+C +P G+TH A ++S S
Sbjct: 11 SSSSRFFFLLVLVLVLSCSLPANGRTHRSPAAAASPS 47
>02_04_0542 - 23762549-23762961,23763051-23763453
Length = 271
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -2
Query: 190 ASKSFFARSTFCLLNCMMPKYGKTHAQDAGSSSLSAHEAHCN 65
A+K F+ R F P +G+T + D ++A AH N
Sbjct: 89 AAKGFYTRDAFLTAAGGYPSFGRTGSVDDSKREIAAFFAHAN 130
>04_04_1405 - 33305948-33309676,33309749-33310468,33310533-33311439,
33334405-33334484
Length = 1811
Score = 28.3 bits (60), Expect = 3.1
Identities = 27/75 (36%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Frame = -3
Query: 381 TPGADDPPLGTNAAHSLACYVQSDPTHVGKHAAACCRR*YLQE*SSP*PGKCG-SKDVHP 205
TPGA DP G A SDP +G C R +L E PG SK+ P
Sbjct: 1039 TPGAPDPQDGPEATVGRPLLSSSDPEDIGTE-GECAPRGHLDE---ECPGDAAPSKEGRP 1094
Query: 204 EVAVQ-PVNHSLHAL 163
VQ PV AL
Sbjct: 1095 RRKVQRPVYFVSEAL 1109
>12_01_0564 -
4567650-4568063,4568154-4568624,4568722-4568923,
4570395-4571104
Length = 598
Score = 27.9 bits (59), Expect = 4.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 154 LLNCMMPKYGKTHAQDAGSSSLSAHEAH 71
LLN ++P YG TH +D+ S S H
Sbjct: 59 LLNEVLPFYGNTHTEDSHVGSKSTRLVH 86
>11_06_0584 - 25220371-25222917
Length = 848
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = -2
Query: 247 LSVTRKVRLKRCPSRSCSAASKSFFARSTFCLLNCMMPKYGKTHAQDAGSSSLS 86
+++ + R + P + K + +ST C C +P+ K DAG S+++
Sbjct: 386 INIRKTARRRELPQKQHQ--HKLRWTQSTICCCYCRVPRIMKATTADAGGSNIN 437
>09_04_0165 + 15274448-15277336
Length = 962
Score = 27.1 bits (57), Expect = 7.2
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +3
Query: 225 RTFLVTERITLADIIVYSTLLHAFQHVLDPTVRSKLVNVQR 347
+ FL+ + +ADII Y+T++ A H + RS + VQR
Sbjct: 773 KVFLMARKQGMADIISYNTIIAA--HAKNGDFRSMIYFVQR 811
>07_03_1697 - 28795521-28797328,28797430-28797550
Length = 642
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -3
Query: 366 DPPLGTNAAHSLACYVQSDPTHVGKHAAACCR 271
D P +A H +C+ P H GK A CR
Sbjct: 352 DHPCCHDARHGPSCHHGCCPPHHGKQACTSCR 383
>02_05_1214 + 34976814-34979813
Length = 999
Score = 26.6 bits (56), Expect = 9.5
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +3
Query: 294 FQHVLDPTVRSKLVNVQRWFLTVGHQPQ--VSSVVGEPVLCLAPPVFDPKKYQ 446
F H+ + K+ + V +P+ V +VV P + APPV PKK Q
Sbjct: 130 FSHIRGE-ITLKIYRTNSGEVVVKSKPEKPVKAVVSGPEVVAAPPVTGPKKQQ 181
>02_04_0266 - 21415912-21418563
Length = 883
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 275 VDDNICKSNPLRDQESAAQKMSIQKLQ 195
+D N+C LRD+ +A K+ I KL+
Sbjct: 299 LDGNLCMVRDLRDRSTAVCKLEIWKLK 325
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,125,880
Number of Sequences: 37544
Number of extensions: 347053
Number of successful extensions: 936
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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