Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_A12
(282 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 42 2e-05
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 40 7e-05
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 35 0.002
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 34 0.004
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 33 0.010
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 31 0.031
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 31 0.041
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 31 0.041
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 31 0.041
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 30 0.072
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 30 0.072
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 30 0.072
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 29 0.17
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 28 0.22
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 28 0.29
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 28 0.29
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 28 0.29
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 27 0.38
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 27 0.51
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 27 0.51
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 27 0.51
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 27 0.51
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 27 0.67
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 27 0.67
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 27 0.67
SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr... 26 0.89
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 25 1.6
SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom... 25 2.7
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc... 24 4.7
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 23 6.3
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 23 8.3
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch... 23 8.3
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 41.5 bits (93), Expect = 2e-05
Identities = 14/48 (29%), Positives = 30/48 (62%)
Frame = +2
Query: 137 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGRE 280
++FVG + + T D+ F+ YG +++C ++ +GFV +E+ + R+
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARD 52
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 39.9 bits (89), Expect = 7e-05
Identities = 15/34 (44%), Positives = 26/34 (76%)
Frame = +2
Query: 137 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN 238
K+F+G L+ +TTD LR FE++G V++C ++R+
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRD 197
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 35.1 bits (77), Expect = 0.002
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +2
Query: 95 AADVETKMPGAGTFKIFVGNLSDKTTDADLRPLFEKYGTV 214
A T A F++FVG LS T +++R LFE GTV
Sbjct: 31 AEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTV 70
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 33.9 bits (74), Expect = 0.004
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 8/51 (15%)
Frame = +2
Query: 140 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQ 268
+FV L+ T D DL +F ++G ++ C ++R+ Y F+ +N++
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKE 296
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 32.7 bits (71), Expect = 0.010
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 134 FKIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN 238
F++FVGNL + D L F +Y ++V+ +VR+
Sbjct: 30 FRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRD 64
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 31.1 bits (67), Expect = 0.031
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +2
Query: 140 IFVGNLSDKTTDADLRPLFEKYGTVVECDIV--RNYGFVHMENEQ 268
+FVG LS ++ +L+ LF+ +G +V I + GFV N Q
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQ 349
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 30.7 bits (66), Expect = 0.041
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 140 IFVGNLSDKTTDADLRPLFEKYGTV 214
+FVGNL +TTDADL+ F + G +
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQI 254
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 30.7 bits (66), Expect = 0.041
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Frame = +2
Query: 119 PGAGTFKIFVGNLSD-KTTDADLRPLFEKYGTVVECDIVRN-----YGFVHMENEQ 268
P + IFVG L T L LF KYG V++C I+ + F+ +++Q
Sbjct: 360 PPIDPYSIFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAFLRFDSQQ 415
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 30.7 bits (66), Expect = 0.041
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Frame = +2
Query: 131 TFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 277
T +FVG LS D L FE+YGT+V ++ + YG+V E + +
Sbjct: 262 TCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAK 318
Score = 24.2 bits (50), Expect = 3.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 140 IFVGNLSDKTTDADLRPLFEKYGTV 214
+FVGNLS T+ DL F G +
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDI 392
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 29.9 bits (64), Expect = 0.072
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Frame = +2
Query: 140 IFVGNLSDKTTDADLRPLFEKYGTVVECDIV-------RNYGFVHMENE 265
I+VGNL T+D +L LF G+V+ I + +G V ENE
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENE 330
Score = 26.2 bits (55), Expect = 0.89
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +2
Query: 137 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV 232
+++VGNLS + +L+ + G V+ C+I+
Sbjct: 67 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEIL 98
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 29.9 bits (64), Expect = 0.072
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +2
Query: 137 KIFVGNLSDKT-TDADLRPLFEKYGTVVECDIVRNYGFVH-MENEQVGR 277
++F+G+L+ K+ + +L +F+ YG + + + NYGFV NE R
Sbjct: 364 RLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKANYGFVQFFTNEDCAR 412
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 29.9 bits (64), Expect = 0.072
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +2
Query: 125 AGTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--RNYGFVHMEN 262
A + +F+GNL + ++ F K+G + I+ +N FVH N
Sbjct: 296 AASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHFLN 343
Score = 23.4 bits (48), Expect = 6.3
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +2
Query: 140 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN--YGFVHMEN 262
++ ++SD T +L + +YG + ++N GFV N
Sbjct: 502 VYFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGFVAYTN 544
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 28.7 bits (61), Expect = 0.17
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Frame = +2
Query: 140 IFVGNLSDKTTDADLRP----LFEKYGTVVE 220
++V NL+DK DLR LF YGTVV+
Sbjct: 6 LYVNNLNDKINKNDLRTALYMLFSTYGTVVD 36
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.3 bits (60), Expect = 0.22
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 140 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRNY--GFVHM 256
+F+G ++ + LR +FE++G+V + NY GF+ M
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKM 448
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 27.9 bits (59), Expect = 0.29
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 140 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN 238
+FV L+++ T +L FE+ G V + IVR+
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRD 274
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 27.9 bits (59), Expect = 0.29
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 137 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN 238
++FV N+S T LR F+ +G V + D+ N
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLN 128
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 27.9 bits (59), Expect = 0.29
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +2
Query: 140 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVR 235
+FV ++ + + +L+ +F K+GTV I+R
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMR 134
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 27.5 bits (58), Expect = 0.38
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Frame = +2
Query: 134 FKIFVGNLSDKTTDADLRPLFEK-YGTVVECDIV--------RNYGFVHMENEQ 268
F IFVG+L T D+DL F Y + I+ R YGFV +E+
Sbjct: 182 FSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEK 235
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 27.1 bits (57), Expect = 0.51
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Frame = +2
Query: 140 IFVGNLSDKTTDADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGR 277
+F+ NLS K T ++ LF +YG V + + R FV EN Q R
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDAR 64
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 27.1 bits (57), Expect = 0.51
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +2
Query: 98 ADVETKMPGAGTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIVR--NYGFVH 253
+++ + G + I++GN D T L+ FE++G + + R N FV+
Sbjct: 402 SNIALAVAGGASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKNCAFVN 455
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 27.1 bits (57), Expect = 0.51
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 140 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN 238
+F+ LS T ++D+ F +YG + +VRN
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRN 134
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 27.1 bits (57), Expect = 0.51
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 140 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN 238
I++GNL +K TD+ L L + G VV I R+
Sbjct: 13 IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRD 45
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 26.6 bits (56), Expect = 0.67
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 140 IFVGNLSDKTTDADLRPLFEKYGTV 214
I+VGN+ + +D ++ F KYG V
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQV 43
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 26.6 bits (56), Expect = 0.67
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 140 IFVGNLSDKTTDADLRPLFEKYG 208
I+VGNL +DL LFE +G
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFG 44
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 26.6 bits (56), Expect = 0.67
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 140 IFVGNLSDKTTDADLRPLFEKYGTV 214
++VGNLS TT+ + LF K G +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEI 58
>SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 180
Score = 26.2 bits (55), Expect = 0.89
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +2
Query: 104 VETKMPGAGTFKIFVGNLSDKTTDADLRPLFEKYGTVVECD 226
++ +M G K + ++ TD +LRP+ EK+ V++ D
Sbjct: 11 IDCEMTGLEVGKHVLMEVAAIITDGNLRPVEEKFDAVIKLD 51
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 25.4 bits (53), Expect = 1.6
Identities = 10/40 (25%), Positives = 20/40 (50%)
Frame = +2
Query: 140 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRNYGFVHME 259
+FV N+ +T+D L+ +G V + R G +++
Sbjct: 317 VFVKNIPPETSDVSLKSAMSIFGPVKAIEFARRKGTAYVD 356
>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 24.6 bits (51), Expect = 2.7
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +2
Query: 101 DVETKMPGAGTFKIFVGNLSDK--TTDADLRPLFEKYGTV-VECDIVRNY 241
D+ T + F I++GN SDK T DL P + + + + I++ Y
Sbjct: 6 DISTVVVQIDEFGIYIGNASDKEPTWKVDLVPYKQSWVPISIVTTIIQRY 55
>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 493
Score = 23.8 bits (49), Expect = 4.7
Identities = 9/35 (25%), Positives = 18/35 (51%)
Frame = +2
Query: 140 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRNYG 244
+ + N+S TT+ L+ KY +++ +I G
Sbjct: 137 VHMDNISPVTTNGSLKESLRKYSSIIAVNIFSETG 171
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 23.4 bits (48), Expect = 6.3
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = +2
Query: 98 ADVETKMPGAGTFKIFVGNLSDKTTDADLRPLFEKYGTV 214
A +E T ++VGNL + + F YGTV
Sbjct: 575 ATIENLTQHEPTHALWVGNLPSGVSATTVATTFSAYGTV 613
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 23.0 bits (47), Expect = 8.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 146 VGNLSDKTTDADLRPLFEKYG 208
V N+ +A LR LFE YG
Sbjct: 878 VTNVDGTVNEARLRSLFESYG 898
>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 388
Score = 23.0 bits (47), Expect = 8.3
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 162 IKRQTLILDRYSKSTVRS*NAISSEITVSSTWKTNKSVGK 281
I+ IL++Y + +S + VSST K K++GK
Sbjct: 136 IRNINSILEKYLRFLNPDLQELSDKKAVSSTQKPIKTIGK 175
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 974,692
Number of Sequences: 5004
Number of extensions: 15147
Number of successful extensions: 67
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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