Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_A11
(374 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch... 140 7e-35
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 110 8e-26
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun... 28 0.55
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 26 1.7
SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter N... 25 3.9
SPAPB8E5.04c |||phosphatidylglycerol/phosphatidylinositol transf... 24 6.8
SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 24 6.8
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 24 6.8
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 9.0
SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr 1... 24 9.0
>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 140 bits (339), Expect = 7e-35
Identities = 65/102 (63%), Positives = 74/102 (72%)
Frame = +2
Query: 68 SKGFDPGQDTYEHPPADGSKVQVDVSPKSDRLQLLAPFDKWDGNDLTEMTILIKVNGKCT 247
SKG+DPG +TY P + K V + P S RLQ L PF KWDG D+ + ILIK GKCT
Sbjct: 530 SKGYDPGSNTYVAPSSVNVK-DVAIDPHSKRLQRLTPFKKWDGKDMKGLKILIKAKGKCT 588
Query: 248 TDHISAAGPWLKYRGHLDNISNNMFITATNAENGELNKVRNQ 373
TDHISAAGPWLKYRGHL NISNN I A NAENGE NK+++Q
Sbjct: 589 TDHISAAGPWLKYRGHLQNISNNYMIGAINAENGEANKLKDQ 630
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 110 bits (264), Expect = 8e-26
Identities = 50/100 (50%), Positives = 65/100 (65%), Gaps = 2/100 (2%)
Frame = +2
Query: 68 SKGFDPGQDTY--EHPPADGSKVQVDVSPKSDRLQLLAPFDKWDGNDLTEMTILIKVNGK 241
S GF G +Y E P + +V + PKSDRL+ L PF+ + G ++ + + +KV GK
Sbjct: 538 SAGFIAGDSSYIPEPNPQPVPETEVTIDPKSDRLEALEPFEPYQGGEMENLKVAVKVKGK 597
Query: 242 CTTDHISAAGPWLKYRGHLDNISNNMFITATNAENGELNK 361
CTTDHISAAG WLKY+GHL NI NN I A NA GE+N+
Sbjct: 598 CTTDHISAAGKWLKYKGHLSNICNNTLIGAMNAATGEVNR 637
>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1165
Score = 27.9 bits (59), Expect = 0.55
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -2
Query: 310 GDVIEMPPVFEPGSSGRDVVGGALAIDLDQDRHLGEVVPVPLVEGRQQLQP 158
GD + P G G+D GAL + + + L + PVP +E + QL P
Sbjct: 7 GDPQKSQPKINKGGIGKDESFGALFKPVYKGKKLAD--PVPTIEDKWQLLP 55
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 26.2 bits (55), Expect = 1.7
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 267 AAEMWSVVHLPLTLIRIVISVRSFPSHLSKGANSCSLSDF 148
A E W VH P T++ VIS+ S P+ S AN + +F
Sbjct: 107 AGERWLPVHSPETILISVISMLSSPNDESP-ANIDAAKEF 145
>SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter
Nic1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 405
Score = 25.0 bits (52), Expect = 3.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 24 WEEFKLSDPFADELPRKVSTPV 89
+E F PF +LP KVS P+
Sbjct: 16 FENFYFEIPFLSKLPPKVSVPI 37
>SPAPB8E5.04c |||phosphatidylglycerol/phosphatidylinositol transfer
protein |Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 24.2 bits (50), Expect = 6.8
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -2
Query: 331 RGDEHIVGDVIEMPPVFEPGSSGRDV 254
RGD+H+V D I + P P ++G+++
Sbjct: 58 RGDDHVVVDYINLIP--NPPAAGKNL 81
>SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 212
Score = 24.2 bits (50), Expect = 6.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 143 SPKSDRLQLLAPFDKWDGNDLTEMTILIKV 232
SP+ ++ P DK +GNDL +KV
Sbjct: 95 SPQEAKVLYATPVDKHNGNDLQAFCEWLKV 124
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 24.2 bits (50), Expect = 6.8
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +1
Query: 19 TDGKNS--SYQIRSRTNCLERFRPRSGYVRTPPRRRQQGTS 135
TD N ++QI C+E ++P SG P Q+G +
Sbjct: 57 TDAINGLLNHQIGFADACIEIYKPISGRASDPESYEQEGNA 97
>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 527
Score = 23.8 bits (49), Expect = 9.0
Identities = 16/56 (28%), Positives = 23/56 (41%)
Frame = +2
Query: 89 QDTYEHPPADGSKVQVDVSPKSDRLQLLAPFDKWDGNDLTEMTILIKVNGKCTTDH 256
+D + P D SK +PK+ LL +D + T +LIK C H
Sbjct: 69 KDILKEQPTD-SKSTTSSAPKNSPFSLLESYDCLQVDTATVQKVLIKRPEGCRELH 123
>SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 455
Score = 23.8 bits (49), Expect = 9.0
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 191 DGNDLTEMTILIKVNGKCTTDHISAAGPW 277
+G + +M + K+ GKCT DH+ W
Sbjct: 225 NGAYVEQMNQIPKLAGKCTGDHMLINMEW 253
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,577,949
Number of Sequences: 5004
Number of extensions: 32171
Number of successful extensions: 107
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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