Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_A11
         (374 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              30   0.010
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              23   1.6  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    21   3.6  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   3.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   4.8  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   6.3  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   6.3  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    20   8.3  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    20   8.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    20   8.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 29.9 bits (64), Expect = 0.010
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 199  RPHRDDDPDQGQWQVHHRPHLGRWTLAQI 285
            RPH  D+     + +H++P  G W  AQI
Sbjct: 1387 RPHPTDNAPIHGYTIHYKPEFGDWDTAQI 1415


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 88  SGYVRTPPRRRQQGTSGRVT-EIGQAATVGALRQVGRERP 204
           S  +   PRRR+      +T  + QAA  G + Q G E+P
Sbjct: 36  SPVITIEPRRRKFHKPITLTIPVPQAANKGMINQYGGEQP 75


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -3

Query: 348 PFSAFVAVMNILLEMLSRCPLYLSQGPAAEMWSVVHLPLTLIRI 217
           P + F     + LE   R   YL+    AE  S +HL  T ++I
Sbjct: 12  PRTPFTTQQLLSLEKKFREKQYLTIAERAEFSSSLHLTETQVKI 55


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = +2

Query: 170 LAPFDKWDGNDLTEMTILIKV 232
           L P+  W+ ND+ ++  +I +
Sbjct: 92  LNPYPNWEMNDINKIDSIINI 112


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 8/34 (23%), Positives = 16/34 (47%)
 Frame = -2

Query: 301 IEMPPVFEPGSSGRDVVGGALAIDLDQDRHLGEV 200
           +++PP  +P      +VG  +    D D H  ++
Sbjct: 290 VDLPPETQPTPPSATLVGTTITHLRDPDHHSTDI 323



 Score = 20.2 bits (40), Expect = 8.3
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 308 SNNMFITATNAENGELNKVRN 370
           SNN  ITA NA     N   N
Sbjct: 223 SNNSTITAGNANTNASNNNNN 243


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 131 VPCCRLRGGVRTYPDRGRNLS 69
           + C  +RGGV      G+NL+
Sbjct: 13  IACQNIRGGVVRENSSGKNLT 33


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -2

Query: 136 HLYLAAVCGGVFVR 95
           HLY+  + GG+ +R
Sbjct: 128 HLYMGLLSGGIILR 141


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 167 LLAPFDKWDGNDL 205
           L+AP+  W  ND+
Sbjct: 102 LIAPYPNWSYNDV 114


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 188 WDGNDLTEMTILIKVNG 238
           WD  +LTE   L KV G
Sbjct: 15  WDLKNLTEAEYLAKVLG 31


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 83  PGQDTYEHPPADGSKVQVDVSPKSDR 160
           PG D     PA  + V  DVSP  ++
Sbjct: 481 PGADDDLFGPASPAYVHEDVSPTFEK 506


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,708
Number of Sequences: 438
Number of extensions: 2227
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9052365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)