Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_A09
         (208 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    25   1.4  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    25   1.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    24   2.4  
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    24   2.4  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    24   2.4  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    23   5.5  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    23   5.5  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    23   7.3  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    23   7.3  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    22   9.6  

>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 131 DEGKLELFSGVVIEKDASGENK 196
           D+G L+LF    +EK+  G+N+
Sbjct: 58  DDGTLDLFGDSELEKEQKGDNQ 79


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +3

Query: 90  GGSLQGLHQGRRMKMKGNWSYSLV 161
           G S++ +H+G+   + GN S+S++
Sbjct: 319 GASIRTIHRGKTSTLSGNRSHSIL 342


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -3

Query: 146  PVSLHLHSPPL-VQPLQATTMHN 81
            P S ++H+PP  VQP+ A   HN
Sbjct: 1370 PDSSNVHAPPPPVQPMNAMPSHN 1392


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +3

Query: 54  LRKCVYVFGIMHGGSLQGLHQGRRMKMKGNWSYSLVLSLRKMHLAKTNSM 203
           L + ++  G ++  S+Q LH       KG++SY+ +L   +   A+  +M
Sbjct: 194 LGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTM 243


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 15  HESDEDPDNFRVNLRKCVYV 74
           HESD    +F  N + CV+V
Sbjct: 112 HESDHSRKHFEKNKKHCVFV 131


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = -3

Query: 137 LHLHSPPLVQPLQATTMHNTKHIHAFSQIYSEVIR 33
           ++  S P ++PL        +  H F   Y+E++R
Sbjct: 417 IYFRSQPGMRPLPGQCNVKVRRDHIFEDSYAEIMR 451


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 60  FSNLL*SYPDPRPIH 16
           F +L+  YPD +P+H
Sbjct: 496 FGHLITDYPDSQPVH 510


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = -3

Query: 137 LHLHSPPLVQPLQATTMHNTKHIHAFSQIYSEVIR 33
           ++  S P + PL        +  H F   Y+E++R
Sbjct: 398 IYFLSQPALHPLPGQCHIKVRRNHIFEDSYAEIMR 432


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 175 RCIWRKQTQC 204
           RCIWRK  +C
Sbjct: 163 RCIWRKGKKC 172


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 3   IPGLHESDEDPDNFRVNLRKCV 68
           I  LH   +DP+  +V L  C+
Sbjct: 67  IQSLHRDYDDPELLKVTLETCL 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 807,622
Number of Sequences: 5004
Number of extensions: 12284
Number of successful extensions: 39
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 48
effective length of database: 2,122,286
effective search space used: 42445720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)