Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_A09
         (208 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0877 - 12072996-12073285,12074312-12074615,12074699-120748...    27   1.6  
06_03_0535 + 21897912-21898064,21898151-21898246,21898362-218984...    27   2.1  
11_04_0048 + 12792270-12792276,12793453-12793697,12793866-12794741     25   6.3  
08_02_0665 + 19818500-19819013,19819169-19819260,19819435-198200...    25   6.3  
04_04_0613 + 26617677-26617963,26618726-26618786,26619598-266198...    25   6.3  
01_05_0463 + 22461169-22461216,22463153-22463248,22463334-224634...    25   6.3  
04_04_1339 + 32760424-32760584,32762428-32764462                       25   8.4  

>03_02_0877 -
           12072996-12073285,12074312-12074615,12074699-12074871,
           12075299-12075434,12076327-12076788,12076882-12077189,
           12077724-12078105
          Length = 684

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +3

Query: 3   IPGLHESDEDPDNFRVNLRKCVYVFGIMHGGSL 101
           IP  H     PD+F V LRK +  F     G L
Sbjct: 99  IPRHHRPPPPPDDFTVALRKALMFFNAQKSGKL 131


>06_03_0535 +
           21897912-21898064,21898151-21898246,21898362-21898474,
           21898590-21898656,21898741-21898833,21898968-21899111,
           21899693-21899781,21899910-21900015,21900119-21900206,
           21900304-21900422,21900913-21901247,21901824-21901933,
           21902070-21902179,21902303-21902413,21902870-21903174,
           21903267-21903375
          Length = 715

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 78  GIMHGGSLQGLHQGRRMKMKGNWSYSLVLSLRKM 179
           G++   +L GL++G+R   K  W+Y + L   K+
Sbjct: 553 GVLGPVTLSGLNEGKRDLSKQKWTYQIGLKGEKL 586


>11_04_0048 + 12792270-12792276,12793453-12793697,12793866-12794741
          Length = 375

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 149 APVSLHLHSPPLVQPLQATTMHNTKHIHAFSQ 54
           A VS  L+SPP++  +++ T H TK +  F +
Sbjct: 231 AVVSFDLNSPPVMDSIESKTCH-TKTLIGFGE 261


>08_02_0665 +
           19818500-19819013,19819169-19819260,19819435-19820056,
           19820575-19820775,19821327-19821395,19821428-19821522,
           19821608-19822153
          Length = 712

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 140 SLHLHSPPLVQPLQATT 90
           SLH H+PP   P  ATT
Sbjct: 251 SLHCHTPPSCLPASATT 267


>04_04_0613 +
           26617677-26617963,26618726-26618786,26619598-26619832,
           26619958-26620196,26620493-26620744,26620844-26621024,
           26621810-26621898,26622200-26622273,26622365-26622443
          Length = 498

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -3

Query: 170 Q*QHQRIAPVSLHLHSPPLVQPLQATTMHNTKH 72
           Q QHQ   P   H H     QP    T HN++H
Sbjct: 33  QHQHQHQQPPHPHHHQYVQRQPQPQQTPHNSQH 65


>01_05_0463 +
           22461169-22461216,22463153-22463248,22463334-22463446,
           22463479-22463494,22463939-22464031,22464118-22464261,
           22464508-22464596,22464687-22464792,22464874-22464961,
           22465585-22465703,22465788-22465952,22466235-22466404,
           22466488-22466597,22466682-22466791,22466886-22466996,
           22467082-22467183,22467266-22467471,22467563-22467881,
           22467983-22468093
          Length = 771

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 78  GIMHGGSLQGLHQGRRMKMKGNWSYSLVLSLRKMHL 185
           GI+   +L GL++GRR      W+Y + L    M L
Sbjct: 501 GILGPVTLDGLNEGRRDLTWQKWTYQVGLKGESMSL 536


>04_04_1339 + 32760424-32760584,32762428-32764462
          Length = 731

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -1

Query: 112 CSPCKLPPCII 80
           C+PCKLPP I+
Sbjct: 506 CTPCKLPPEIV 516


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,502,779
Number of Sequences: 37544
Number of extensions: 88414
Number of successful extensions: 230
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 14,793,348
effective HSP length: 48
effective length of database: 12,991,236
effective search space used: 259824720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)