Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_A09
         (208 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71260-1|CAA95798.1|  744|Caenorhabditis elegans Hypothetical pr...    26   4.2  
U60113-1|AAB03334.1|  715|Caenorhabditis elegans SEM-4 short for...    26   4.2  
U60112-1|AAB03333.1|  744|Caenorhabditis elegans SEM-4 long form...    26   4.2  
Z75535-1|CAA99827.1| 1127|Caenorhabditis elegans Hypothetical pr...    25   5.6  
U29097-4|AAM98031.1|  308|Caenorhabditis elegans Hypothetical pr...    25   5.6  
U28944-13|AAA68372.1|  365|Caenorhabditis elegans Hypothetical p...    25   5.6  
Z82071-2|CAB04918.2|  362|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z81479-11|CAB03937.2| 1441|Caenorhabditis elegans Hypothetical p...    25   9.7  
Z73423-8|CAO82012.1| 1441|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>Z71260-1|CAA95798.1|  744|Caenorhabditis elegans Hypothetical
           protein F15C11.1 protein.
          Length = 744

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 176 LSQ*QHQRIAPVSLHLHSPP 117
           + Q QHQ   P  +H+H+PP
Sbjct: 375 MHQHQHQIAPPQRIHIHNPP 394


>U60113-1|AAB03334.1|  715|Caenorhabditis elegans SEM-4 short form
           protein.
          Length = 715

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 176 LSQ*QHQRIAPVSLHLHSPP 117
           + Q QHQ   P  +H+H+PP
Sbjct: 346 MHQHQHQIAPPQRIHIHNPP 365


>U60112-1|AAB03333.1|  744|Caenorhabditis elegans SEM-4 long form
           protein.
          Length = 744

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 176 LSQ*QHQRIAPVSLHLHSPP 117
           + Q QHQ   P  +H+H+PP
Sbjct: 375 MHQHQHQIAPPQRIHIHNPP 394


>Z75535-1|CAA99827.1| 1127|Caenorhabditis elegans Hypothetical
           protein F14B4.3 protein.
          Length = 1127

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 116 LVQPLQATTMHNTKHIHAFSQIYSEVI 36
           L++P++   M   +HI  F Q+Y  V+
Sbjct: 598 LIRPVRNLAMDAVEHIGTFEQVYLSVV 624


>U29097-4|AAM98031.1|  308|Caenorhabditis elegans Hypothetical
           protein F18C5.4 protein.
          Length = 308

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -1

Query: 106 PCKLPPCIIPNT 71
           PCK PPCII  T
Sbjct: 257 PCKNPPCIIKTT 268


>U28944-13|AAA68372.1|  365|Caenorhabditis elegans Hypothetical
           protein C18A3.1 protein.
          Length = 365

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 146 PVSLHLHSPPLVQPLQATTMHNTKHIHAFSQ 54
           P+S+H H PPL+  L+   +  T+ +  F++
Sbjct: 307 PMSVHSHKPPLLDLLRHFGIEFTEPLELFAR 337


>Z82071-2|CAB04918.2|  362|Caenorhabditis elegans Hypothetical
           protein W05B5.2 protein.
          Length = 362

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 146 PVSLHLHSPPLVQPLQATTMHNTKHIHAFSQIYSEVIRIL 27
           PV+LHL   P V+P   TT   T+   ++S+ + +  ++L
Sbjct: 178 PVTLHLAGAPFVRP-NFTTKWGTRCKESWSEEFQKNYQLL 216


>Z81479-11|CAB03937.2| 1441|Caenorhabditis elegans Hypothetical
            protein C34F6.10 protein.
          Length = 1441

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 14/63 (22%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = -3

Query: 197  VCFRQMHLSQ*QHQRIAPVSLHLHSPPLVQPLQATTMHNTKHIHAFS--QIYSEVIRILV 24
            +C R+ HL +      +PV    + PP ++ ++   +H    +H F+  + Y+  + +L+
Sbjct: 1341 MCVRK-HLEEELKGSPSPVGYIGNVPPTIESVKNEEIHQKSRLHLFTTDRAYAYSLLVLL 1399

Query: 23   RFM 15
             F+
Sbjct: 1400 IFL 1402


>Z73423-8|CAO82012.1| 1441|Caenorhabditis elegans Hypothetical protein
            C34F6.10 protein.
          Length = 1441

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 14/63 (22%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = -3

Query: 197  VCFRQMHLSQ*QHQRIAPVSLHLHSPPLVQPLQATTMHNTKHIHAFS--QIYSEVIRILV 24
            +C R+ HL +      +PV    + PP ++ ++   +H    +H F+  + Y+  + +L+
Sbjct: 1341 MCVRK-HLEEELKGSPSPVGYIGNVPPTIESVKNEEIHQKSRLHLFTTDRAYAYSLLVLL 1399

Query: 23   RFM 15
             F+
Sbjct: 1400 IFL 1402


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,585,644
Number of Sequences: 27780
Number of extensions: 73636
Number of successful extensions: 237
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 12,740,198
effective HSP length: 48
effective length of database: 11,406,758
effective search space used: 228135160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)