Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_A08
(226 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 48 2e-07
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ... 27 0.33
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting... 26 0.77
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch... 24 2.4
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 24 2.4
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce... 24 3.1
SPBP8B7.05c |||carbonic anhydrase |Schizosaccharomyces pombe|chr... 24 3.1
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 23 4.1
SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom... 23 4.1
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 23 5.4
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 23 7.2
SPCC23B6.05c |ssb3|rpa3|DNA replication factor A subunit Ssb3|Sc... 23 7.2
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb... 23 7.2
SPCC18.15 |||WD repeat protein, human WRDR85 family|Schizosaccha... 22 9.5
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha... 22 9.5
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 47.6 bits (108), Expect = 2e-07
Identities = 26/64 (40%), Positives = 38/64 (59%)
Frame = +2
Query: 11 TWSYNKIRMGEHKLKPPALHKTITANCLTVTHCGNFVLIGYSNGQVHKLNMQSGIYRGHY 190
TW++ +G+H L P + ++ + C V+ CGNF LIG S G V NMQSGI R +
Sbjct: 426 TWNWKSKTLGQHVL-PTSDGTSVRSVC--VSCCGNFGLIGSSKGVVDVYNMQSGIKRKSF 482
Query: 191 GKEN 202
G+ +
Sbjct: 483 GQSS 486
>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 27.1 bits (57), Expect = 0.33
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 14 WSYNKIRMGEHKLKPPALHKTITANCLTVTHCGNFVLI 127
W+++K+R EH LK A+ ++ + + C VLI
Sbjct: 7 WTFHKLRKNEHFLKYSAIFYSLLKPVVALFACQCLVLI 44
>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
complex subunit Apc4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 719
Score = 25.8 bits (54), Expect = 0.77
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +2
Query: 77 ITANCLTVTHCGNFVLIGYSNGQVHKLNMQSG 172
+ A L H GN +++G+ NG++ ++ +G
Sbjct: 69 LEATELCWNHDGNLIVVGFKNGELKIIDSSTG 100
>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 24.2 bits (50), Expect = 2.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 110 GNFVLIGYSNGQVHKLNMQ 166
G F+LI + NG H LN +
Sbjct: 147 GGFMLIRHPNGTAHSLNFR 165
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 24.2 bits (50), Expect = 2.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 145 GSQVEYAVWYISRSLWQR 198
GS VEY + + RS+W+R
Sbjct: 38 GSYVEYEIVHQKRSVWRR 55
>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 23.8 bits (49), Expect = 3.1
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -2
Query: 129 PMRTKFPQWVTVKQLAVIVLCNAGGFSLCSPIRILL*DHVASC 1
P+R+ P + V L + +LC S CSP ILL + C
Sbjct: 60 PIRSVVP--LNVMLLPIFLLCRCICKSNCSPYPILLFTRLYMC 100
>SPBP8B7.05c |||carbonic anhydrase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 23.8 bits (49), Expect = 3.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 134 SNGQVHKLNMQSGIYRGHYG 193
SNGQ+ KL++ I + YG
Sbjct: 221 SNGQIKKLDITDAIKKAKYG 240
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 23.4 bits (48), Expect = 4.1
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -3
Query: 200 SLCHNDLDIYQTAYSTCE 147
S+C+ND ++ +TA S E
Sbjct: 719 SICYNDFNLLETANSDAE 736
>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 437
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 137 NGQVHKLNMQSGIYRGHYGK 196
+G V K+N+ +G YR GK
Sbjct: 61 DGDVKKMNLGAGTYRDDAGK 80
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 23.0 bits (47), Expect = 5.4
Identities = 7/28 (25%), Positives = 17/28 (60%)
Frame = +2
Query: 89 CLTVTHCGNFVLIGYSNGQVHKLNMQSG 172
C+ + G F++ G+ GQ+ ++ ++G
Sbjct: 150 CIDYSPNGRFIVSGHQTGQLFLISTETG 177
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 22.6 bits (46), Expect = 7.2
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 203 CSLCHNDLDIYQTAYSTCEPDHYYNQ*EQNFHNG 102
CS CH+D ++ +PDH + E++ H+G
Sbjct: 341 CS-CHHDKFSRPVPHNGTKPDHKPWKHEEHCHHG 373
Score = 22.2 bits (45), Expect = 9.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 203 CSLCHNDLDIYQTAYSTCEPDHYYNQ*EQNFHNG 102
CS CH+D ++ +PDH + E++ H+G
Sbjct: 173 CS-CHHDKFPRPVPHNGTKPDHKPWKHEEHCHHG 205
Score = 22.2 bits (45), Expect = 9.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 203 CSLCHNDLDIYQTAYSTCEPDHYYNQ*EQNFHNG 102
CS CH+D ++ +PDH + E++ H+G
Sbjct: 258 CS-CHHDKFPRPVPHNGTKPDHKPWKHEEHCHHG 290
>SPCC23B6.05c |ssb3|rpa3|DNA replication factor A subunit
Ssb3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 104
Score = 22.6 bits (46), Expect = 7.2
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = -3
Query: 191 HNDLDIYQTAYSTCEPDHYY 132
+ D++ T +T EP+H+Y
Sbjct: 40 NGSFDMHLTVDNTLEPNHFY 59
>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 22.6 bits (46), Expect = 7.2
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = -2
Query: 72 LCNAGGFSLCSP 37
LC+ GFS+C+P
Sbjct: 11 LCSCRGFSVCTP 22
>SPCC18.15 |||WD repeat protein, human WRDR85
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 310
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/43 (20%), Positives = 21/43 (48%)
Frame = +2
Query: 92 LTVTHCGNFVLIGYSNGQVHKLNMQSGIYRGHYGKENKDTHKC 220
L + G + + SNG V +++ SG+ + + + + + C
Sbjct: 105 LDFSDSGKELAVSMSNGSVLIIDIDSGVIKNKWKEHDYEAWTC 147
>SPBC32H8.09 |||WD repeat protein, human WDR8
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +2
Query: 62 ALHKTITANCLTVTHCGNFVLIGYSNGQV 148
AL ++ +V+HCGN++ +G V
Sbjct: 5 ALFASLNPTFASVSHCGNWIASLSRSGHV 33
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,023,286
Number of Sequences: 5004
Number of extensions: 17803
Number of successful extensions: 49
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 54
effective length of database: 2,092,262
effective search space used: 41845240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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