Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_A08
(226 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0914 + 25920277-25920405,25920783-25920810,25920890-259209... 50 3e-07
01_03_0222 - 13919404-13919476,13920048-13920181 27 1.5
12_02_0117 - 13860418-13860524,13860612-13860810,13860969-138611... 26 3.6
06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,336... 26 3.6
05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,364... 26 3.6
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336... 26 3.6
11_06_0410 - 23223701-23223714,23223863-23225159,23225314-232262... 25 6.2
07_01_0755 - 5806614-5806939,5807039-5809415 25 8.2
>06_03_0914 +
25920277-25920405,25920783-25920810,25920890-25920990,
25921356-25921479,25921793-25921903,25922222-25922397,
25922766-25922848,25922935-25923007,25923630-25923695,
25923776-25923818,25924600-25924739,25924878-25925090,
25925397-25925481,25925558-25925852,25926855-25927110,
25927237-25927450,25927701-25927912,25928054-25928203
Length = 832
Score = 50.0 bits (114), Expect = 3e-07
Identities = 23/59 (38%), Positives = 31/59 (52%)
Frame = +2
Query: 14 WSYNKIRMGEHKLKPPALHKTITANCLTVTHCGNFVLIGYSNGQVHKLNMQSGIYRGHY 190
W +GEH L P + K+ C ++ CGNF +G G + K N+QSGI RG Y
Sbjct: 335 WRLQNFVIGEHILTPSSGSKSPIKAC-AISACGNFTFLGTEGGWIEKFNLQSGISRGSY 392
>01_03_0222 - 13919404-13919476,13920048-13920181
Length = 68
Score = 27.5 bits (58), Expect = 1.5
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +2
Query: 68 HKTITANCLTVTHCGNFVLIGYSNGQV 148
H +A+C HC +FV G G V
Sbjct: 23 HSAASASCYLRRHCASFVFCGIGGGDV 49
>12_02_0117 -
13860418-13860524,13860612-13860810,13860969-13861148,
13861230-13861375,13862185-13862323,13863076-13863153,
13863654-13863722,13863806-13863925,13864792-13864875,
13864961-13865032,13865204-13865345,13866016-13866023
Length = 447
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = -1
Query: 211 CIFVLFAIMTSIYTRLHIQLVNLTITITN 125
C F + T++Y + I+++NL+++ TN
Sbjct: 188 CAFQCALLYTTVYGQRRIRVINLSLSCTN 216
>06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,
3363820-3364098,3364189-3364386,3364475-3365110,
3365209-3365463,3365579-3365685,3365770-3369566,
3369677-3370166,3370918-3371308,3371481-3371573,
3371687-3371810,3372544-3372791
Length = 2380
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 113 NFVLIGYSNGQVHKLNMQSGIYRGHYGKENKDTH 214
NF +G + + K NM+ G R Y ++++ TH
Sbjct: 2295 NFNFMGVKHDPLMKYNMKLGTPRDFYHEDHRPTH 2328
>05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,
3645328-3645525,3645614-3646249,3646352-3646606,
3646718-3646824,3646909-3650705,3650816-3651305,
3652043-3652433,3652621-3652713,3652818-3652941,
3653871-3654118
Length = 2350
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 113 NFVLIGYSNGQVHKLNMQSGIYRGHYGKENKDTH 214
NF +G + + K NM+ G R Y ++++ TH
Sbjct: 2295 NFNFMGVKHDPLMKYNMKLGTPRDFYHEDHRPTH 2328
>02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,
3366324-3366449,3367056-3367262,3367399-3367492,
3367575-3367621,3367705-3368157,3368261-3368560,
3368656-3369114,3369189-3369410,3369659-3369890,
3370051-3370422,3371210-3371322,3371682-3371903,
3371977-3372180,3372308-3372572,3373123-3373311,
3373441-3373768,3373843-3374248,3374339-3374648,
3375677-3375837,3376825-3376998,3377265-3377609,
3377713-3377754,3378585-3378734,3378847-3379002,
3379088-3379540,3379651-3379966,3380402-3380839,
3381475-3381697,3383538-3383852,3384033-3384095,
3384699-3384903,3385362-3385425,3386014-3386204
Length = 3048
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 86 NCLTVTHCGNFVLIGYSNGQVHKLNMQS 169
NC+ ++ CG FV+ +GQ+ +M S
Sbjct: 2961 NCMELSCCGEFVVCAGDHGQIVLRSMHS 2988
>11_06_0410 -
23223701-23223714,23223863-23225159,23225314-23226225,
23226952-23227023,23227323-23227471,23227879-23227912
Length = 825
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/47 (23%), Positives = 23/47 (48%)
Frame = -1
Query: 217 LMCIFVLFAIMTSIYTRLHIQLVNLTITITNENKISTMGDCQAISSN 77
L ++++F + +TR++ +VN + + + MG QA N
Sbjct: 132 LTILYLMFFFSSLFFTRIYRSMVNFLDPVADATLVYIMGAMQAAPLN 178
>07_01_0755 - 5806614-5806939,5807039-5809415
Length = 900
Score = 25.0 bits (52), Expect = 8.2
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = -1
Query: 193 AIMTSIYTRLHIQLVNLTITITNENKISTMGDCQAISS 80
AI +S++ ++Q++ LT+ N T+G C A+S+
Sbjct: 230 AIPSSLFDLGNLQVLILTVNRLNGTIPDTIGRCSALSN 267
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,368,588
Number of Sequences: 37544
Number of extensions: 105999
Number of successful extensions: 225
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 14,793,348
effective HSP length: 54
effective length of database: 12,765,972
effective search space used: 255319440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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