Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_A08
         (226 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021492-3|CAA16382.3|  893|Caenorhabditis elegans Hypothetical ...    41   1e-04
Z75711-2|CAB00033.2|  425|Caenorhabditis elegans Hypothetical pr...    30   0.19 
Z68222-10|CAA92505.3| 1701|Caenorhabditis elegans Hypothetical p...    29   0.59 
Z68218-5|CAA92475.3| 1701|Caenorhabditis elegans Hypothetical pr...    29   0.59 
U23521-10|AAC46808.1|  129|Caenorhabditis elegans Hypothetical p...    28   1.0  
Z81116-6|CAB03299.1|  416|Caenorhabditis elegans Hypothetical pr...    27   1.8  
Z30973-3|CAA83222.1|  420|Caenorhabditis elegans Hypothetical pr...    26   3.1  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    26   3.1  
Z93373-2|CAN99669.1| 1671|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z93373-1|CAB07551.1| 1601|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical p...    25   7.2  
Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical pr...    25   7.2  
Z92806-1|CAB07258.1|  802|Caenorhabditis elegans Hypothetical pr...    25   9.6  
U40187-1|AAA81158.3|  459|Caenorhabditis elegans Hypothetical pr...    25   9.6  
U00052-13|AAW88393.1|  608|Caenorhabditis elegans Hypothetical p...    25   9.6  
U00052-12|AAK21428.2|  631|Caenorhabditis elegans Hypothetical p...    25   9.6  
AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protei...    25   9.6  
AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A prot...    25   9.6  

>AL021492-3|CAA16382.3|  893|Caenorhabditis elegans Hypothetical
           protein Y45F10D.7 protein.
          Length = 893

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 17/30 (56%), Positives = 20/30 (66%)
 Frame = +2

Query: 83  ANCLTVTHCGNFVLIGYSNGQVHKLNMQSG 172
           A  L V+ CGNFV IGYS G + + N QSG
Sbjct: 399 ATALCVSPCGNFVFIGYSTGHIDQFNAQSG 428


>Z75711-2|CAB00033.2|  425|Caenorhabditis elegans Hypothetical
           protein K02B12.3 protein.
          Length = 425

 Score = 30.3 bits (65), Expect = 0.19
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 14  WSYNKIRMGEHKLKPPALHKTITANCLTVTHCGNFVLIGYSNGQV 148
           W++N  R     +    L K  + + L V+ CGNF  +G  +G V
Sbjct: 281 WAFNSERNVARPVVTKLLAKGQSISSLAVSDCGNFTAVGTMSGSV 325


>Z68222-10|CAA92505.3| 1701|Caenorhabditis elegans Hypothetical
            protein ZK1251.9 protein.
          Length = 1701

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 119  VLIGYSNGQVHKLNMQSGIYRGH 187
            +++G  NG+VH +N+ +G+  GH
Sbjct: 1103 LIVGLFNGEVHWINVDTGLDEGH 1125


>Z68218-5|CAA92475.3| 1701|Caenorhabditis elegans Hypothetical protein
            ZK1251.9 protein.
          Length = 1701

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 119  VLIGYSNGQVHKLNMQSGIYRGH 187
            +++G  NG+VH +N+ +G+  GH
Sbjct: 1103 LIVGLFNGEVHWINVDTGLDEGH 1125


>U23521-10|AAC46808.1|  129|Caenorhabditis elegans Hypothetical
           protein F41C3.1 protein.
          Length = 129

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 60  LHYIKQLLLIA*QSPIVEILFSLVIVMVRF 149
           LHYIKQ+LL+   S I  +L S    ++ F
Sbjct: 39  LHYIKQMLLVTHNSRITTLLGSCQATIISF 68


>Z81116-6|CAB03299.1|  416|Caenorhabditis elegans Hypothetical
           protein T06C12.7 protein.
          Length = 416

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = -3

Query: 218 TYVYLCSLCHNDLDIYQTAYSTCEPDHYYNQ*EQNFHNG*LSSN*Q*LFYVMQEVLVYVH 39
           TY+ LC L  N LD+    YS    D +  +  +N H   +  N Q   + +Q+++  V+
Sbjct: 324 TYM-LCQLVWNSLDVELNNYSADIGDKFLAEISENLHEYYMHQNVQNYAWRLQKLMKIVN 382


>Z30973-3|CAA83222.1|  420|Caenorhabditis elegans Hypothetical
           protein B0284.4 protein.
          Length = 420

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 20  YNKIRMGEHKLKPPALHKTITANCLTVTHCGNFVLIGYSNGQVHKLNMQ 166
           +N  ++G H+ K   +++  +   L V+   N VL    N  VHKL +Q
Sbjct: 162 FNDDKIGYHEKKVQQMNENASKIELLVSQTTNLVLEQEKNDIVHKLAIQ 210


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +2

Query: 47   KLKPPALHKTITANCLTVTHCGNFVLIGYSNGQVHKLNMQSGI 175
            +L  P  H   T   + V H G  V +   NG  HK+ + S I
Sbjct: 2124 ELAKPNFHYMSTIQSVNVNHGGRSVSLTAPNGVAHKMLLTSVI 2166


>Z93373-2|CAN99669.1| 1671|Caenorhabditis elegans Hypothetical protein
            C01B9.1b protein.
          Length = 1671

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -1

Query: 157  QLVNLTITITNENKISTMGDC 95
            QLVNL +T+ NE++I  + +C
Sbjct: 1481 QLVNLDLTVRNESEILELLEC 1501


>Z93373-1|CAB07551.1| 1601|Caenorhabditis elegans Hypothetical protein
            C01B9.1a protein.
          Length = 1601

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -1

Query: 157  QLVNLTITITNENKISTMGDC 95
            QLVNL +T+ NE++I  + +C
Sbjct: 1411 QLVNLDLTVRNESEILELLEC 1431


>Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical
            protein F10F2.1 protein.
          Length = 2507

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 89   CLTVTHCGNFVLIGYSNGQVH 151
            C+TVT  G F + G  NG+++
Sbjct: 2412 CVTVTRDGEFAVTGAVNGRIN 2432


>Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical protein
            F10F2.1 protein.
          Length = 2507

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 89   CLTVTHCGNFVLIGYSNGQVH 151
            C+TVT  G F + G  NG+++
Sbjct: 2412 CVTVTRDGEFAVTGAVNGRIN 2432


>Z92806-1|CAB07258.1|  802|Caenorhabditis elegans Hypothetical
           protein K10G4.1 protein.
          Length = 802

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -1

Query: 190 IMTSIYTRLHIQLVNLTITITNENKISTMGDC 95
           +M ++      QLVNL + + NE++I  + +C
Sbjct: 603 LMPNVLRSHKFQLVNLGLAVRNESEILELLEC 634


>U40187-1|AAA81158.3|  459|Caenorhabditis elegans Hypothetical
           protein F11H8.2 protein.
          Length = 459

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 2   HEATWSYNKIRMGEHKLKPPALHKTITANCLTVTH 106
           HEAT   + +R+  H     ++  T+TANC    H
Sbjct: 147 HEATSHNSFLRIDNHGNVLRSIRLTVTANCPMSLH 181


>U00052-13|AAW88393.1|  608|Caenorhabditis elegans Hypothetical
           protein K02F3.12b protein.
          Length = 608

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 102 VTVKQLAVIVLCNAGGFSLCSPIRILL 22
           V  K+ AV++L   GG SLC  +  LL
Sbjct: 98  VMSKEDAVVILSTGGGKSLCYQLPALL 124


>U00052-12|AAK21428.2|  631|Caenorhabditis elegans Hypothetical
           protein K02F3.12a protein.
          Length = 631

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 102 VTVKQLAVIVLCNAGGFSLCSPIRILL 22
           V  K+ AV++L   GG SLC  +  LL
Sbjct: 121 VMSKEDAVVILSTGGGKSLCYQLPALL 147


>AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protein 1
           protein.
          Length = 1908

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +2

Query: 77  ITANCLTVTHCGNFVLIGYSNGQVHKLNMQS 169
           +TA  +  T       +G   GQ+HK+ ++S
Sbjct: 420 LTAIAINTTRSSTVAFVGTQGGQLHKILIES 450


>AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A
           protein.
          Length = 1951

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +2

Query: 77  ITANCLTVTHCGNFVLIGYSNGQVHKLNMQS 169
           +TA  +  T       +G   GQ+HK+ ++S
Sbjct: 426 LTAIAINTTRSSTVAFVGTQGGQLHKILIES 456


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,711,334
Number of Sequences: 27780
Number of extensions: 102608
Number of successful extensions: 282
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 12,740,198
effective HSP length: 54
effective length of database: 11,240,078
effective search space used: 224801560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)