Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_A04
(248 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0189 + 12444797-12444976,12445057-12445204,12445574-124458... 30 0.30
02_02_0600 + 12018256-12018502,12018943-12019073,12019104-12019553 28 1.2
07_03_0916 + 22565620-22566463,22566566-22566792,22566892-22567509 27 1.6
01_01_0976 + 7711634-7711801,7712741-7713183,7715813-7716251 27 2.8
12_02_1127 - 26334225-26334500,26334600-26334761,26334849-263349... 26 3.7
08_01_0408 - 3616655-3617108,3617190-3617596,3618120-3618287 26 3.7
04_04_1665 - 35164114-35164188,35164361-35164415,35164535-351648... 26 3.7
03_05_1114 - 30500518-30500913,30501312-30501372,30501455-305015... 26 4.8
09_03_0056 - 11936264-11939677 25 6.4
07_03_0407 - 17791696-17791831,17792531-17792646,17794029-177942... 25 6.4
05_07_0111 - 27752339-27752777,27753356-27753840,27753956-27754120 25 6.4
05_04_0122 + 18198594-18202269,18202551-18202591,18203273-182032... 25 6.4
02_01_0717 + 5351504-5351602,5353401-5353499,5353574-5353675,535... 25 6.4
12_01_0768 + 6975005-6975490 25 8.5
11_06_0224 + 21447875-21448944,21449465-21449624 25 8.5
07_01_0795 - 6257985-6258149,6258276-6258380,6259196-6259328,626... 25 8.5
01_06_1526 + 38003071-38003247,38003338-38003690,38004489-38004987 25 8.5
>04_03_0189 +
12444797-12444976,12445057-12445204,12445574-12445874,
12445930-12446144,12446145-12446282,12446414-12446605,
12446740-12446786
Length = 406
Score = 29.9 bits (64), Expect = 0.30
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +2
Query: 125 IASWMCFFRTSCYVITSSDGTLSSCLLWW 211
+ +W C T C + S DG S C + W
Sbjct: 318 LPAWTCVAETGCEIEVSIDGPCSQCTVLW 346
>02_02_0600 + 12018256-12018502,12018943-12019073,12019104-12019553
Length = 275
Score = 27.9 bits (59), Expect = 1.2
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = -3
Query: 165 T*QEVRKKHIQLAIRWHQEKQPH 97
T +E++K + +LA++WH +K P+
Sbjct: 16 TEEELKKAYRKLAMKWHPDKNPN 38
>07_03_0916 + 22565620-22566463,22566566-22566792,22566892-22567509
Length = 562
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 172 GDNITRGT-KKAHPASYKMAPRETTSSILNIWSTKVLSSDLRLSIPLTKS 26
G N+ RG K+ P +++ + +WST V S+ S+PL KS
Sbjct: 359 GVNLVRGVVKEVKPREIELSDGSRVPYGVLVWSTGVGPSEFVRSLPLPKS 408
>01_01_0976 + 7711634-7711801,7712741-7713183,7715813-7716251
Length = 349
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 156 EVRKKHIQLAIRWHQEKQPHQYSIYGRLKF 67
+++K + +LA+RWH +K P KF
Sbjct: 19 DLKKAYHKLAMRWHPDKNPTNNKKEAEAKF 48
>12_02_1127 -
26334225-26334500,26334600-26334761,26334849-26334938,
26335075-26335236,26335330-26335431,26335562-26335633,
26335716-26335851,26335939-26336120,26336387-26336406,
26336440-26336521,26336612-26336713,26336796-26336909,
26337412-26337462,26337583-26337651,26337972-26338049,
26338357-26338458,26338785-26338865,26339008-26339109,
26339217-26339576
Length = 780
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 60 DDRTLVDHILSIDEVVSLGAIL*LAGCAFFVPLV 161
D R + +I S+DE + +GA L L+ AF + L+
Sbjct: 210 DSRPDLVNIRSVDEAIVIGAALSLSSSAFVLQLL 243
>08_01_0408 - 3616655-3617108,3617190-3617596,3618120-3618287
Length = 342
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = -3
Query: 165 T*QEVRKKHIQLAIRWHQEKQPHQYSIYGRLKF 67
T ++++K + ++A++WH +K P KF
Sbjct: 16 TEEDLKKSYRRMAMKWHPDKNPGDKKKEAEAKF 48
>04_04_1665 -
35164114-35164188,35164361-35164415,35164535-35164844,
35165401-35165521,35165701-35165796,35166163-35166266,
35167368-35167485
Length = 292
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = -3
Query: 213 NHQSRQELSVPSELVIT*QEVRKKHIQLAIRWHQEKQPHQYSIYGRLKF 67
+H R L +P+ +T V+ A+RWH +K P KF
Sbjct: 227 SHAHRAILGLPACGPLTLDAVKTAFRASALRWHPDKHPGSSQAVAEEKF 275
>03_05_1114 -
30500518-30500913,30501312-30501372,30501455-30501558,
30501680-30501739,30502419-30502599,30502873-30503037,
30503395-30503531
Length = 367
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Frame = +2
Query: 116 CHLIASWMCFFRT----SCYVITSSDGTLSSCLLW 208
C LIA + F + CY+ TS + S+ LLW
Sbjct: 225 CDLIAKKLSFLKVVTTEKCYIPTSLSSSFSADLLW 259
>09_03_0056 - 11936264-11939677
Length = 1137
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +3
Query: 171 PARMEHLALVYFGGLSSSFL 230
P ++ H+++++F GLSSS L
Sbjct: 668 PPKVRHVSILHFSGLSSSDL 687
>07_03_0407 -
17791696-17791831,17792531-17792646,17794029-17794233,
17794691-17795034
Length = 266
Score = 25.4 bits (53), Expect = 6.4
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 96 DEVVSLGAI-L*LAGCAFFVPLVMLSPARMEHLALVYFGGLSSSFLYT 236
D +S G + + LAG A+ V L + ++ L LV FG L++ L+T
Sbjct: 37 DVAISAGLVAVQLAGAAYMVVLAPVLALGLDPLFLVTFGSLATG-LFT 83
>05_07_0111 - 27752339-27752777,27753356-27753840,27753956-27754120
Length = 362
Score = 25.4 bits (53), Expect = 6.4
Identities = 7/20 (35%), Positives = 16/20 (80%)
Frame = -3
Query: 156 EVRKKHIQLAIRWHQEKQPH 97
+++K + +LA++WH +K P+
Sbjct: 19 DLKKAYRKLAMKWHPDKNPN 38
>05_04_0122 +
18198594-18202269,18202551-18202591,18203273-18203281,
18203336-18203551,18204257-18204361,18204761-18204919
Length = 1401
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/32 (37%), Positives = 24/32 (75%)
Frame = +3
Query: 12 VNTYFDFVKGIDNRKSDDRTLVDHILSIDEVV 107
++T F F+ GI++R+S+ TL +L+I++V+
Sbjct: 20 LSTEFSFIGGIEHRRSELYTL---LLAINQVI 48
>02_01_0717 +
5351504-5351602,5353401-5353499,5353574-5353675,
5353756-5353815,5353900-5354006,5354114-5354196,
5354372-5354462,5354561-5354768
Length = 282
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -3
Query: 159 QEVRKKHIQLAIRWHQEKQP 100
QE++K + +LA+R H +K P
Sbjct: 44 QEIKKAYHKLALRLHPDKNP 63
>12_01_0768 + 6975005-6975490
Length = 161
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +3
Query: 9 VVNTYFDFVKGIDN--RKSDDRTLVDHILSIDEVV 107
V + F+F I N ++ DD L+D I+ ID+ V
Sbjct: 11 VADVIFEFDMRIKNGEKEEDDLQLIDEIIEIDDNV 45
>11_06_0224 + 21447875-21448944,21449465-21449624
Length = 409
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 96 DEVVSLGAI-L*LAGCAFFVPLVMLSPARMEHLALVYFGGLSSS 224
D V++ G + + LAG A+ V L ++ L LV FG L+++
Sbjct: 61 DAVIAAGMMGVQLAGAAYMVVLAPAMERGLDPLFLVTFGSLANA 104
>07_01_0795 -
6257985-6258149,6258276-6258380,6259196-6259328,
6260225-6260289,6260569-6261642,6262328-6262433,
6262872-6263044,6263352-6263765
Length = 744
Score = 25.0 bits (52), Expect = 8.5
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -3
Query: 99 HQYSIYGRLKFCHQIYDYL 43
H Y IYG+++ C I+D +
Sbjct: 351 HSYCIYGQVENCKAIFDLM 369
>01_06_1526 + 38003071-38003247,38003338-38003690,38004489-38004987
Length = 342
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 192 LSVPSELVIT*QEVRKKHIQLAIRWHQEKQP 100
L++P E + QE+R + L +WH +K P
Sbjct: 12 LNIPRET--SPQEIRAAYKSLVKKWHPDKHP 40
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,840,587
Number of Sequences: 37544
Number of extensions: 120924
Number of successful extensions: 357
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 14,793,348
effective HSP length: 61
effective length of database: 12,503,164
effective search space used: 262566444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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