Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_A04
         (248 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical pr...    31   0.082
Z79600-1|CAB01873.1|  239|Caenorhabditis elegans Hypothetical pr...    31   0.14 
AL032639-9|CAA21633.1|  303|Caenorhabditis elegans Hypothetical ...    27   1.8  
Z81113-2|CAB03279.1|  510|Caenorhabditis elegans Hypothetical pr...    26   3.1  
Z93390-3|CAB07676.1|  680|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr...    26   4.1  
U00066-3|AAA50740.1|  177|Caenorhabditis elegans Hypothetical pr...    26   4.1  
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p...    26   4.1  
Z81041-2|CAB02787.4| 1403|Caenorhabditis elegans Hypothetical pr...    25   5.4  
U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical pr...    25   5.4  
Z66521-16|CAA91396.2|  793|Caenorhabditis elegans Hypothetical p...    25   7.1  
U97194-8|AAB52447.3| 1254|Caenorhabditis elegans Prion-like-(q/n...    25   7.1  
L23649-1|AAA27912.1|  568|Caenorhabditis elegans Hypothetical pr...    25   7.1  
AF188715-1|AAF05590.1|  793|Caenorhabditis elegans alanyl-tRNA s...    25   7.1  
U40941-7|AAA81712.1|  312|Caenorhabditis elegans Hypothetical pr...    25   9.4  
AC006733-3|AAF60488.2|  372|Caenorhabditis elegans Hypothetical ...    25   9.4  

>U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical
           protein ZK418.6 protein.
          Length = 825

 Score = 31.5 bits (68), Expect = 0.082
 Identities = 16/63 (25%), Positives = 31/63 (49%)
 Frame = -2

Query: 214 KPPK*TRAKCSIRAGDNITRGTKKAHPASYKMAPRETTSSILNIWSTKVLSSDLRLSIPL 35
           +PP+     C + AG+N+ R  + A P    +A         ++W +K + +D+  ++ L
Sbjct: 446 RPPERPSTSCKLEAGENLRR--RPAPPKQNHVASPAEDQLDTSVWKSKHIRTDVIKAVEL 503

Query: 34  TKS 26
            KS
Sbjct: 504 GKS 506


>Z79600-1|CAB01873.1|  239|Caenorhabditis elegans Hypothetical
           protein F59C6.2 protein.
          Length = 239

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 140 CFFRTSCYVITSSDGTLSSCLLWWFIIIISVHWWYW 247
           CF R   Y+IT S GT  + + + F + +++HW  W
Sbjct: 130 CFNRYY-YLITRSQGTEDTMVKFAFFLFVTLHWIMW 164


>AL032639-9|CAA21633.1|  303|Caenorhabditis elegans Hypothetical
           protein Y38F1A.8 protein.
          Length = 303

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = +3

Query: 54  KSDDRTLVDHILSIDEVVSLGAIL*LAGCAFFVPLVML 167
           KS     V+ +L I  VV LGA+L  AGC F V    L
Sbjct: 30  KSPIEDTVEKMLRIRWVVCLGALLPGAGCYFVVAYTYL 67


>Z81113-2|CAB03279.1|  510|Caenorhabditis elegans Hypothetical
           protein T03F6.2 protein.
          Length = 510

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = -3

Query: 156 EVRKKHIQLAIRWHQEKQP 100
           +++K + +LA++WH +K P
Sbjct: 43  KIKKNYRKLALKWHPDKNP 61


>Z93390-3|CAB07676.1|  680|Caenorhabditis elegans Hypothetical
           protein T23B5.1a protein.
          Length = 680

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 102 PHQYSIYGRLKFCHQIYD 49
           PHQ ++Y RL  C +I+D
Sbjct: 270 PHQATVYVRLFSCREIFD 287


>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical protein
            F18C12.2b protein.
          Length = 2271

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 7/33 (21%), Positives = 21/33 (63%)
 Frame = -3

Query: 153  VRKKHIQLAIRWHQEKQPHQYSIYGRLKFCHQI 55
            +R+++ +LA ++H +K P    ++ R+   +++
Sbjct: 1341 IRRQYYKLAAKYHPDKNPEGREMFERINAAYEL 1373


>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical protein
            F18C12.2a protein.
          Length = 2279

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 7/33 (21%), Positives = 21/33 (63%)
 Frame = -3

Query: 153  VRKKHIQLAIRWHQEKQPHQYSIYGRLKFCHQI 55
            +R+++ +LA ++H +K P    ++ R+   +++
Sbjct: 1341 IRRQYYKLAAKYHPDKNPEGREMFERINAAYEL 1373


>U00066-3|AAA50740.1|  177|Caenorhabditis elegans Hypothetical
           protein R12B2.2 protein.
          Length = 177

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 88  NIWSTKVLSSDLRLSIPLTKSKYVLTTLV 2
           ++W  K L+  +R     +K++Y+L TLV
Sbjct: 86  DVWKCKFLAQSIRCDELTSKNEYLLKTLV 114


>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
            protein RME-8 protein.
          Length = 2279

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 7/33 (21%), Positives = 21/33 (63%)
 Frame = -3

Query: 153  VRKKHIQLAIRWHQEKQPHQYSIYGRLKFCHQI 55
            +R+++ +LA ++H +K P    ++ R+   +++
Sbjct: 1341 IRRQYYKLAAKYHPDKNPEGREMFERINAAYEL 1373


>Z81041-2|CAB02787.4| 1403|Caenorhabditis elegans Hypothetical
           protein C27A7.4 protein.
          Length = 1403

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 124 KMAPRETTS-SILNIWSTKVLSSDLRLSIPLTK 29
           KMA  +T+S S   + +T  +S DL+LSIP  K
Sbjct: 361 KMAAIQTSSNSFTLLHATSGVSQDLKLSIPSAK 393


>U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical
           protein C18H2.1 protein.
          Length = 1770

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +3

Query: 12  VNTYFDFVKGIDNRKSDDRTLVDHILSIDEVVSLGAIL 125
           + TYFD + G+D++  +     D++ +I   + +  IL
Sbjct: 776 LETYFDTIFGLDHKHEEAEVQTDYLPAIGLCIGIFIIL 813


>Z66521-16|CAA91396.2|  793|Caenorhabditis elegans Hypothetical
           protein W02B12.6a protein.
          Length = 793

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 30  FVKGIDNRKSDD-RTLVDHILSIDEVVSLGAIL*LAGCAFFVPLVM 164
           +   +D+R+    R + DHI +    +S GA+    GC F V  +M
Sbjct: 288 YTGSLDSRQDATFRLVADHIRAATVAISDGAVPDGTGCGFIVRKMM 333


>U97194-8|AAB52447.3| 1254|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 20
            protein.
          Length = 1254

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -3

Query: 246  QYHQCTEMMMINHQSRQELSVPSEL 172
            Q+H+  EMMM++HQ +Q+L    ++
Sbjct: 1186 QHHE--EMMMMHHQQQQQLQQQQQM 1208


>L23649-1|AAA27912.1|  568|Caenorhabditis elegans Hypothetical
           protein C02C2.4 protein.
          Length = 568

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 151 TKKAHPASYKMAPRETTSSILNIWSTKVLSSDLRLSIPLTK 29
           T  +HPA  KM  ++    +L     KV  S+   SIP +K
Sbjct: 279 TASSHPAKVKMMTKKEKEYLLANVVKKVHKSEKTRSIPYSK 319


>AF188715-1|AAF05590.1|  793|Caenorhabditis elegans alanyl-tRNA
           synthetase protein.
          Length = 793

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 30  FVKGIDNRKSDD-RTLVDHILSIDEVVSLGAIL*LAGCAFFVPLVM 164
           +   +D+R+    R + DHI +    +S GA+    GC F V  +M
Sbjct: 288 YTGSLDSRQDATFRLVADHIRAATVAISDGAVPDGTGCGFIVRKMM 333


>U40941-7|AAA81712.1|  312|Caenorhabditis elegans Hypothetical
           protein F35C8.8 protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 107 FSWCHLIASWMC 142
           FSWCH I S  C
Sbjct: 163 FSWCHFIISGSC 174


>AC006733-3|AAF60488.2|  372|Caenorhabditis elegans Hypothetical
           protein Y32H12A.1 protein.
          Length = 372

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 155 SCYVITSSDGTLSSCLLWWFII 220
           S  +I +S G L +CLL W II
Sbjct: 57  SIKIILNSIGLLLNCLLLWLII 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,003,190
Number of Sequences: 27780
Number of extensions: 107227
Number of successful extensions: 302
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 12,740,198
effective HSP length: 62
effective length of database: 11,017,838
effective search space used: 220356760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)