Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_A04
(248 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB072429-1|BAB83990.1| 388|Apis mellifera IP3phosphatase protein. 22 1.3
AF023666-1|AAC14552.1| 363|Apis mellifera sn-glycerol-3-phospha... 21 2.3
AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor typ... 21 3.1
DQ011227-1|AAY63896.1| 484|Apis mellifera Amt-1-like protein pr... 20 4.0
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 20 5.3
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 20 5.3
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 20 5.3
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 20 5.3
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 20 5.3
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 20 5.3
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 20 5.3
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 20 5.3
DQ863218-1|ABI94394.1| 399|Apis mellifera tyramine receptor pro... 19 7.1
DQ863217-1|ABI94393.1| 399|Apis mellifera tyramine receptor pro... 19 7.1
AJ245824-1|CAB76374.1| 399|Apis mellifera G-protein coupled rec... 19 7.1
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 19 9.3
AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein. 19 9.3
>AB072429-1|BAB83990.1| 388|Apis mellifera IP3phosphatase protein.
Length = 388
Score = 21.8 bits (44), Expect = 1.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 109 ETTSSILNIWSTKVLSSDLRL 47
E S +L IW+ + LS+ LRL
Sbjct: 20 EEPSVMLKIWTEEFLSTILRL 40
>AF023666-1|AAC14552.1| 363|Apis mellifera sn-glycerol-3-phosphate
dehydrogenase protein.
Length = 363
Score = 21.0 bits (42), Expect = 2.3
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = +3
Query: 33 VKGIDNRKSDDRTLVDHILS 92
+KG D ++ L+ HI+S
Sbjct: 120 IKGFDKKQGGGIELISHIIS 139
>AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor type
D2 protein.
Length = 456
Score = 20.6 bits (41), Expect = 3.1
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = +2
Query: 125 IASWMCFFRTSCYVITSSDGTLSSCLLWWFIIIISVHWWYW 247
I W+ FF V+ G S C+ I+ +V W W
Sbjct: 345 IICWLPFF-----VVNLWSGFCSQCIWQEKIVFAAVTWLGW 380
>DQ011227-1|AAY63896.1| 484|Apis mellifera Amt-1-like protein
protein.
Length = 484
Score = 20.2 bits (40), Expect = 4.0
Identities = 5/16 (31%), Positives = 10/16 (62%)
Frame = +2
Query: 197 CLLWWFIIIISVHWWY 244
CL +W I+ ++ W+
Sbjct: 392 CLAFWSFIVSTILLWF 407
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 19.8 bits (39), Expect = 5.3
Identities = 6/22 (27%), Positives = 16/22 (72%)
Frame = +3
Query: 36 KGIDNRKSDDRTLVDHILSIDE 101
KG++ ++ ++L+ ++L ID+
Sbjct: 329 KGMELQEKSSKSLLANVLDIDD 350
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 19.8 bits (39), Expect = 5.3
Identities = 6/22 (27%), Positives = 16/22 (72%)
Frame = +3
Query: 36 KGIDNRKSDDRTLVDHILSIDE 101
KG++ ++ ++L+ ++L ID+
Sbjct: 329 KGMELQEKSSKSLLANVLDIDD 350
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 19.8 bits (39), Expect = 5.3
Identities = 6/22 (27%), Positives = 16/22 (72%)
Frame = +3
Query: 36 KGIDNRKSDDRTLVDHILSIDE 101
KG++ ++ ++L+ ++L ID+
Sbjct: 329 KGMELQEKSSKSLLANVLDIDD 350
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 19.8 bits (39), Expect = 5.3
Identities = 6/22 (27%), Positives = 16/22 (72%)
Frame = +3
Query: 36 KGIDNRKSDDRTLVDHILSIDE 101
KG++ ++ ++L+ ++L ID+
Sbjct: 329 KGMELQEKSSKSLLANVLDIDD 350
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 19.8 bits (39), Expect = 5.3
Identities = 6/22 (27%), Positives = 16/22 (72%)
Frame = +3
Query: 36 KGIDNRKSDDRTLVDHILSIDE 101
KG++ ++ ++L+ ++L ID+
Sbjct: 329 KGMELQEKSSKSLLANVLDIDD 350
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 19.8 bits (39), Expect = 5.3
Identities = 6/22 (27%), Positives = 16/22 (72%)
Frame = +3
Query: 36 KGIDNRKSDDRTLVDHILSIDE 101
KG++ ++ ++L+ ++L ID+
Sbjct: 329 KGMELQEKSSKSLLANVLDIDD 350
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 19.8 bits (39), Expect = 5.3
Identities = 6/22 (27%), Positives = 16/22 (72%)
Frame = +3
Query: 36 KGIDNRKSDDRTLVDHILSIDE 101
KG++ ++ ++L+ ++L ID+
Sbjct: 397 KGMELQEKSSKSLLANVLDIDD 418
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 19.8 bits (39), Expect = 5.3
Identities = 6/22 (27%), Positives = 16/22 (72%)
Frame = +3
Query: 36 KGIDNRKSDDRTLVDHILSIDE 101
KG++ ++ ++L+ ++L ID+
Sbjct: 397 KGMELQEKSSKSLLANVLDIDD 418
>DQ863218-1|ABI94394.1| 399|Apis mellifera tyramine receptor
protein.
Length = 399
Score = 19.4 bits (38), Expect = 7.1
Identities = 6/15 (40%), Positives = 12/15 (80%)
Frame = +3
Query: 141 AFFVPLVMLSPARME 185
+FF+PL+++S +E
Sbjct: 204 SFFIPLLLMSLVYLE 218
>DQ863217-1|ABI94393.1| 399|Apis mellifera tyramine receptor
protein.
Length = 399
Score = 19.4 bits (38), Expect = 7.1
Identities = 6/15 (40%), Positives = 12/15 (80%)
Frame = +3
Query: 141 AFFVPLVMLSPARME 185
+FF+PL+++S +E
Sbjct: 204 SFFIPLLLMSLVYLE 218
>AJ245824-1|CAB76374.1| 399|Apis mellifera G-protein coupled
receptor protein.
Length = 399
Score = 19.4 bits (38), Expect = 7.1
Identities = 6/15 (40%), Positives = 12/15 (80%)
Frame = +3
Query: 141 AFFVPLVMLSPARME 185
+FF+PL+++S +E
Sbjct: 204 SFFIPLLLMSLVYLE 218
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 19.0 bits (37), Expect = 9.3
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = -3
Query: 114 QEKQPHQYSIYGRLKFCHQ 58
Q+KQ + YG+L H+
Sbjct: 1087 QQKQKRRMVKYGKLVMIHE 1105
>AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein.
Length = 429
Score = 19.0 bits (37), Expect = 9.3
Identities = 7/28 (25%), Positives = 15/28 (53%)
Frame = -3
Query: 135 QLAIRWHQEKQPHQYSIYGRLKFCHQIY 52
+L ++ H+E+Q Q CH+++
Sbjct: 384 KLTLKRHKEQQHFQPLNSAVCALCHKVF 411
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,295
Number of Sequences: 438
Number of extensions: 1215
Number of successful extensions: 17
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used: 4401495
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)
- SilkBase 1999-2023 -