Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_A03
(300 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 160 3e-41
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 160 3e-41
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 31 0.048
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 29 0.19
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 26 1.0
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 1.0
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 1.4
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po... 25 2.4
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 25 3.1
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c... 25 3.1
SPCC63.13 |||DNAJ domain protein|Schizosaccharomyces pombe|chr 3... 24 4.2
SPCC970.06 |||cargo receptor for soluble proteins |Schizosacchar... 24 5.5
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 5.5
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc... 24 5.5
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 24 5.5
SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces ... 23 7.3
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 23 7.3
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 23 7.3
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 23 9.6
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 23 9.6
SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch... 23 9.6
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz... 23 9.6
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 23 9.6
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 160 bits (389), Expect = 3e-41
Identities = 70/90 (77%), Positives = 79/90 (87%)
Frame = +1
Query: 28 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEHL 207
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYE +
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 208 SSEALEAGRICCNKYLVKNCGKDQFHIRMR 297
+SEALEA RIC NKYLVK GKD FH+R+R
Sbjct: 61 TSEALEAARICANKYLVKIGGKDSFHLRVR 90
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 160 bits (389), Expect = 3e-41
Identities = 70/90 (77%), Positives = 79/90 (87%)
Frame = +1
Query: 28 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEHL 207
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYE +
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 208 SSEALEAGRICCNKYLVKNCGKDQFHIRMR 297
+SEALEA RIC NKYLVK GKD FH+R+R
Sbjct: 61 TSEALEAARICANKYLVKIGGKDSFHLRVR 90
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 30.7 bits (66), Expect = 0.048
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 109 DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEHLSSEALEA 228
DPK+R+F KRAT + C LV+ + H+ S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 28.7 bits (61), Expect = 0.19
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 52 YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDEYEHLSSEALEA 228
Y+ N ++FC V + KI + +KRA +D LC+ +S + E ++ +LE+
Sbjct: 34 YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93
Query: 229 G 231
G
Sbjct: 94 G 94
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 26.2 bits (55), Expect = 1.0
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 7 GRFVENTMGRRPARCYRYCKNKPYPK 84
G F++N G + C+ C K YPK
Sbjct: 423 GEFLKNAAGMQCIDCHYTCHKKCYPK 448
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.2 bits (55), Expect = 1.0
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = +1
Query: 130 DLGKKRATVDDFPLCVHLVSDEYEHL---SSEALEAGRICCN--KYLVKNCGK 273
++ KKRA DD + +VS EYE+L SS+ ++ N KY+ KN K
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQK 1085
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 25.8 bits (54), Expect = 1.4
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 223 PAPQNSNARTHQTLSARIVGSHPLSLSFCPSRKYGSLGQA 104
P P +S+ R Q+LSA + S+P S PS GSL +
Sbjct: 473 PKPSSSSRRRSQSLSAMLKTSNPYMPS--PSLLSGSLANS 510
>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 2.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -1
Query: 168 WEVIHCRSLFAQVENTDLWVRHTPT 94
+ ++H +LFA EN D ++ PT
Sbjct: 343 YAILHWNTLFANEENWDSYIPQDPT 367
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 24.6 bits (51), Expect = 3.1
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +1
Query: 85 SRFCRGVPDPKIRIFDLGKKRATVDDFP-LCVHLVSDE 195
S FC PDPK K A DD P + H+ S++
Sbjct: 84 SFFCTTTPDPKTESPSFVKYNAHCDDHPEISGHVSSND 121
>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 297
Score = 24.6 bits (51), Expect = 3.1
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +2
Query: 134 WAKRERQWMTSH 169
W +RERQW+ H
Sbjct: 91 WLRRERQWLQRH 102
>SPCC63.13 |||DNAJ domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 208
Score = 24.2 bits (50), Expect = 4.2
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -2
Query: 251 YLLQQIRPASSASELKCSYSSDTKCTHSGKSSTVA 147
Y + I P +SA E+K +Y TH + S A
Sbjct: 6 YAILNITPKASAEEIKYAYKKAALETHPDRVSPSA 40
>SPCC970.06 |||cargo receptor for soluble proteins
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 302
Score = 23.8 bits (49), Expect = 5.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 241 NRYGLLPAPQNSNARTHQTLSARIV 167
NR+ LPA N RT+ L+ R++
Sbjct: 170 NRFAGLPAVSEHNKRTYFQLAGRVL 194
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 23.8 bits (49), Expect = 5.5
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -2
Query: 254 RYLLQQIRPASSASELKCSYSSDTKCTHSGKSSTVALFLPKSK 126
R+LLQ++ ++ + S + T S +SS V+ P+S+
Sbjct: 137 RFLLQKLGKDPNSKPIDYKSSMASSSTRSSQSSQVSAIQPQSQ 179
>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 425
Score = 23.8 bits (49), Expect = 5.5
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -3
Query: 229 LLPAPQNSNARTHQTLSARIVGSHPLSLSFCP 134
L P + N R HQ+++ + HP + F P
Sbjct: 221 LRPGTKLGNVRFHQSVNLKRWKQHPDQIEFIP 252
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 23.8 bits (49), Expect = 5.5
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 242 QQIRPASSAS-ELKCSYSSDTKCTHSGKSSTVAL 144
+ IR + S S LK S S + THS KSS+V +
Sbjct: 1104 KNIRQSRSGSISLKHSKSFQSASTHSTKSSSVEI 1137
>SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 307
Score = 23.4 bits (48), Expect = 7.3
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 124 IFDLGKKRATVDDFPLCVH 180
IFD AT+DD CVH
Sbjct: 143 IFDFLTLSATIDDTIFCVH 161
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 23.4 bits (48), Expect = 7.3
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 199 EHLSSEALEAGRICCN 246
E LSS+ + RICCN
Sbjct: 262 ESLSSQQMSCLRICCN 277
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 23.4 bits (48), Expect = 7.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 10 RFVENTMGRRPARCYRYCKNKPYP 81
RFV T GRRP+ C + PYP
Sbjct: 407 RFVSMTTGRRPSIPLE-CISIPYP 429
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 23.0 bits (47), Expect = 9.6
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 242 QQIRPASSASELKCSYSSD 186
QQ+RP++S S SY+S+
Sbjct: 133 QQVRPSTSRSPSYASYNSE 151
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 23.0 bits (47), Expect = 9.6
Identities = 9/36 (25%), Positives = 19/36 (52%)
Frame = -2
Query: 275 SLPQFFTRYLLQQIRPASSASELKCSYSSDTKCTHS 168
+LP+F+ L++ A+++ YS + C H+
Sbjct: 110 NLPEFYNDNLIKHFHKDPEAAKVPHLYSIASSCYHA 145
>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 382
Score = 23.0 bits (47), Expect = 9.6
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -3
Query: 196 THQTLSARIVGSHPLSLSFCPSRKYGSLGQAHPD-KTEI 83
T + L I+ +H L+ + +R+ GSL PD KT++
Sbjct: 133 TPEKLPLTILLAHKLNAAMSVARRDGSLPWLRPDTKTQV 171
>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 23.0 bits (47), Expect = 9.6
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -1
Query: 57 SITSRWSAPHC 25
+I SRW PHC
Sbjct: 496 TIKSRWEIPHC 506
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 23.0 bits (47), Expect = 9.6
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 133 LGKKRATVDDFPLCVHLVSDEYEHLSSEALEAGRICCNKYLVKNCGKD-QFHIR 291
+ ++ VD++ H +S Y L L + CC+ +LVK+ D F IR
Sbjct: 526 MSSAQSLVDNYFNNDHDLS-RYGFLLVSLLRLRQFCCHPWLVKSSSLDNSFRIR 578
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,347,239
Number of Sequences: 5004
Number of extensions: 26298
Number of successful extensions: 95
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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