Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_A03
         (300 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          23   1.1  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    22   1.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   1.9  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    20   5.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    20   5.7  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    20   7.6  

>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 229 LLPAPQNSNARTHQTLSARIVGSHPLSLSFCPSRKYGSLG 110
           L+  P  + +  H  + A  V  + LSLS  P   +GS G
Sbjct: 2   LVARPMQALSIRHAVILASFVWIYALSLSLPPLFGWGSYG 41


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +2

Query: 101 VCLTQRSVFSTWAKRERQWMTSH 169
           +CLT+R +   +  R  +W   H
Sbjct: 45  LCLTERQIKIWFQNRRMKWKKEH 67


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 251 YLLQQIRPASSASELKCSYSSDTKCTHSGKSSTVA 147
           YL+    PASS   L  + +S T  +    SST A
Sbjct: 816 YLMVGNSPASSPRYLSAAATSSTSTSPRPASSTAA 850


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic
          acetylcholine receptor alpha6subunit protein.
          Length = 529

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 9  SLCGEHNGAPTSEMLS 56
          SLCG H     +E+LS
Sbjct: 49 SLCGRHEKRLLNELLS 64


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic
          acetylcholine receptor alpha6subunit protein.
          Length = 529

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 9  SLCGEHNGAPTSEMLS 56
          SLCG H     +E+LS
Sbjct: 49 SLCGRHEKRLLNELLS 64


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 7/27 (25%), Positives = 13/27 (48%)
 Frame = +2

Query: 101 VCLTQRSVFSTWAKRERQWMTSHYACT 181
           +CLT+R +   +  R  +W   +   T
Sbjct: 45  LCLTERQIKIWFQNRRMKWKKENARAT 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,645
Number of Sequences: 438
Number of extensions: 2151
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)