Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_A02
         (392 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    27   1.4  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    25   3.2  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    25   3.2  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    25   5.5  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    24   7.3  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    24   7.3  
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    24   9.7  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   9.7  
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei...    24   9.7  

>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +3

Query: 66  FLDCLYKKELGRTEIRT---IVLSVMFFP*SLLEKIRQHFW 179
           +LD   +K +  T + T   +VL +M  P  L+  I QHFW
Sbjct: 351 YLDSNRRKCIKLTSLDTYSLLVLEIMKHPSLLISAISQHFW 391


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = -2

Query: 298 RGDVLVSSIKTK-SLRLSSLHFTRHLDLCCSSQMYSEVHRVQKCCRIFSRSDYGKNITDK 122
           R D +  S+ T   L  SS HF R ++          + RV+  C   S  +  K   +K
Sbjct: 263 RDDRITGSLATLLRLNFSSTHFLRLIEFYWGVPTNLIIKRVEVVCSSISYKESDKKELEK 322

Query: 121 TI 116
           T+
Sbjct: 323 TV 324


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 160 FSRSDYGKNITDKTIVRISVRPSSFLYRQ 74
           F R+ YG ++ DK + ++ + PS+ L  Q
Sbjct: 211 FPRASYGTDVFDKPVNQLDLFPSAVLIPQ 239


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 20  VGCPWYKLNVFLF 58
           + CPWY  NV LF
Sbjct: 639 ISCPWYGTNVKLF 651


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +3

Query: 252 SLNDLVLIEETNTSPLCWRLGRVCKLFLGPD 344
           S+ DL+++ ++   PL  +LG+   LF+GPD
Sbjct: 677 SIIDLLIVNKSQ--PLVDKLGKPEILFMGPD 705


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 75  NLKIFINKNTFNLYHGQPTC 16
           N + FIN N F  + GQ  C
Sbjct: 107 NCRAFINSNAFGKFKGQHYC 126


>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +2

Query: 29  PWYKLNVFLFIKIF 70
           PWYK+ +++F +I+
Sbjct: 385 PWYKVPIYIFFQIW 398


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 142 HNRS*KRFDSTSGRDGLPNTFVNCSKD 222
           H+R  + FD+ S  D +P++F + + D
Sbjct: 576 HSRILRNFDAISSIDSIPDSFSDSAVD 602


>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
           Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 205 QMYSEVHRV-QKCCRIFSRSDYGKNITDKTI 116
           Q  SE+  + QK  + F   DY KN++DKTI
Sbjct: 24  QSVSEMKSIKQKSFQYFD--DYEKNVSDKTI 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,617,459
Number of Sequences: 5004
Number of extensions: 30914
Number of successful extensions: 90
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)