Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_A02
(392 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0323 - 2522834-2523229,2524737-2524952 30 0.58
04_04_1700 - 35465563-35465625,35465748-35465875,35466018-354660... 29 1.8
03_05_1063 + 30048724-30048753,30049036-30049175,30049282-300493... 29 1.8
01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225 28 3.1
07_01_1182 + 11207282-11207330,11208015-11208094,11208181-112086... 27 5.4
04_04_0940 - 29539138-29539626,29540125-29540531,29540631-295406... 27 7.1
01_07_0384 + 43209423-43210241 27 7.1
05_05_0321 + 24091997-24092530 26 9.4
01_01_0359 + 2829325-2832076,2832223-2832593,2833335-2833695,283... 26 9.4
>03_01_0323 - 2522834-2523229,2524737-2524952
Length = 203
Score = 30.3 bits (65), Expect = 0.58
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = -2
Query: 325 LHTLPNLQQRGDVL-VSSIKTKSLRLSSLHFT 233
+H LP+L++RGD+L +KT S+R + FT
Sbjct: 35 VHDLPSLKKRGDILCYDEVKTISIRSRGVVFT 66
>04_04_1700 -
35465563-35465625,35465748-35465875,35466018-35466096,
35466818-35467624
Length = 358
Score = 28.7 bits (61), Expect = 1.8
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = -2
Query: 322 HTLPNLQQRGDVLVSSIKTKSLRLSSLHFTRHL-DLCCSSQMYSEVHRVQKCCRIFSRSD 146
+ L + RG++ V + T L LH HL DL CS + +++ C +
Sbjct: 70 NVLEFVSPRGEIFVCTAATTDLESGPLHHHHHLMDLGCSCK--NDLALAHYACALKWFIT 127
Query: 145 YGKNITDKT-IVRISVRPSSF 86
+G + + V ++VRP+ F
Sbjct: 128 HGSTVCEICGHVAVNVRPADF 148
>03_05_1063 +
30048724-30048753,30049036-30049175,30049282-30049336,
30049419-30049526,30050190-30050288,30050380-30050457,
30050558-30050635,30051875-30051949,30052117-30052217,
30052502-30052527,30053224-30053297,30053358-30053379,
30054108-30054223,30054361-30054618,30054716-30054832,
30055649-30055699,30055859-30056086,30056550-30056648,
30056823-30056999,30057298-30057417
Length = 683
Score = 28.7 bits (61), Expect = 1.8
Identities = 19/70 (27%), Positives = 34/70 (48%)
Frame = -2
Query: 355 LGMLSGPRNSLHTLPNLQQRGDVLVSSIKTKSLRLSSLHFTRHLDLCCSSQMYSEVHRVQ 176
+GM + L + ++Q R D + +S+ K + LH TR+L L +Y R+
Sbjct: 63 VGMEANMEQLLSKITSVQSRSDTVNTSLFDKRENIEKLHRTRNL-LRKVQFIYDLPTRLN 121
Query: 175 KCCRIFSRSD 146
KC + + +D
Sbjct: 122 KCIKTEAYAD 131
>01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225
Length = 467
Score = 27.9 bits (59), Expect = 3.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 190 VHRVQKCCRIFSRSDYGKNITDK 122
V V CC +F SD GK+ T+K
Sbjct: 78 VQNVNICCAVFDFSDRGKDTTEK 100
>07_01_1182 +
11207282-11207330,11208015-11208094,11208181-11208645,
11213485-11213568,11213925-11214113,11214191-11214277,
11214343-11214969
Length = 526
Score = 27.1 bits (57), Expect = 5.4
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -2
Query: 313 PNLQQRGDVLVSSIKTKSLRLSSLHFTRHLDLCCSSQMYSEVH 185
PN++ RGD+L++ ++ K +S + T+ L + + VH
Sbjct: 21 PNMKMRGDILINGLREKLSFGTSAYVTQENVLMATLTVTEAVH 63
>04_04_0940 -
29539138-29539626,29540125-29540531,29540631-29540662,
29540809-29541086,29541164-29542515,29542616-29542874
Length = 938
Score = 26.6 bits (56), Expect = 7.1
Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 7/102 (6%)
Frame = -2
Query: 361 ATLGMLSGPRNSLHTLPNLQQRGDVLVSSIKTKSLRLSSLHFTRHLDLCCSSQMYS---- 194
A +G LS + H L +L V + S LSSL + + S Q
Sbjct: 97 AIIGPLSS--TTAHVLSHLANELHVPLMSFSATDPTLSSLEYPFFVRTTVSDQFQMTAVA 154
Query: 193 ---EVHRVQKCCRIFSRSDYGKNITDKTIVRISVRPSSFLYR 77
E + ++ IF +DYG+N +S R S LY+
Sbjct: 155 DLVEYYGWKQVTTIFVDNDYGRNAISSLGDELSKRRSKILYK 196
>01_07_0384 + 43209423-43210241
Length = 272
Score = 26.6 bits (56), Expect = 7.1
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -2
Query: 229 HLDLC--CSSQMYSEVHRVQKCCRIFSRSDYGKNITDKT 119
H ++C C+S +Y HR C R++ R G + D T
Sbjct: 103 HSNICALCNSYIYLFRHRCLVCGRVYCRRCVGAGMGDMT 141
>05_05_0321 + 24091997-24092530
Length = 177
Score = 26.2 bits (55), Expect = 9.4
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +3
Query: 243 RELSLNDLVLIEETNTSP 296
RELS +DLV++E+T +P
Sbjct: 41 RELSFSDLVVVEDTANNP 58
>01_01_0359 +
2829325-2832076,2832223-2832593,2833335-2833695,
2833799-2833868,2834021-2834108,2834325-2834580,
2834758-2834883,2835217-2835425
Length = 1410
Score = 26.2 bits (55), Expect = 9.4
Identities = 14/51 (27%), Positives = 21/51 (41%)
Frame = -2
Query: 217 CCSSQMYSEVHRVQKCCRIFSRSDYGKNITDKTIVRISVRPSSFLYRQSKN 65
C S S R+ IF DY N +I+ ++PS+ L + N
Sbjct: 829 CSPSNTLSFSQRLNIVIDIFEAMDYLHNHCQPSIIHCDMKPSNILLAEDMN 879
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,850,304
Number of Sequences: 37544
Number of extensions: 179705
Number of successful extensions: 484
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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