Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_A02
         (392 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical ...    36   0.008
Z75713-4|CAB00050.1|  603|Caenorhabditis elegans Hypothetical pr...    31   0.22 
Z82090-4|CAB05008.2|  543|Caenorhabditis elegans Hypothetical pr...    30   0.68 
Z81510-4|CAB04164.1|  839|Caenorhabditis elegans Hypothetical pr...    27   3.6  
Z36753-17|CAA85342.1|  821|Caenorhabditis elegans Hypothetical p...    27   3.6  
AF240692-1|AAF61239.1|  821|Caenorhabditis elegans LIN-5 protein.      27   3.6  
U23179-7|AAC46721.1|  782|Caenorhabditis elegans Hypothetical pr...    27   4.8  
Z54216-4|CAA90947.1|  421|Caenorhabditis elegans Hypothetical pr...    26   8.4  
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr...    26   8.4  
AL033508-1|CAA22058.2|  821|Caenorhabditis elegans Hypothetical ...    26   8.4  
AL021483-3|CAA16343.1|  331|Caenorhabditis elegans Hypothetical ...    26   8.4  

>AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical
            protein ZC132.5 protein.
          Length = 1277

 Score = 36.3 bits (80), Expect = 0.008
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
 Frame = +3

Query: 162  IRQHFWTRWTSEYICELQQRSKWRV-KCRELS----LNDLVLIEETNTSPLCWRLGRVCK 326
            I +  W  W   Y+ EL++  K R+   RE++    +  +VLI + N     W++G++ +
Sbjct: 1047 IIEDIWKIWNKTYLSELRETHKLRMDNKREINDSPFVGQVVLICDPNLPRNNWKMGKITE 1106

Query: 327  LFLGPDNIPRVAELSTVNG 383
                 D I R A L T  G
Sbjct: 1107 TKPSTDGILREAHLLTATG 1125


>Z75713-4|CAB00050.1|  603|Caenorhabditis elegans Hypothetical
           protein T01G9.3 protein.
          Length = 603

 Score = 31.5 bits (68), Expect = 0.22
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 201 ICELQQR-SKWRVKCRELSLNDLVLIEETNTSPLCWR 308
           +CE  Q  S W V CR+  +ND +  E  N  PL  R
Sbjct: 27  LCECDQNDSSWSVYCRKAIINDTIYAEILNQLPLTLR 63


>Z82090-4|CAB05008.2|  543|Caenorhabditis elegans Hypothetical
           protein ZK337.2 protein.
          Length = 543

 Score = 29.9 bits (64), Expect = 0.68
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 256 RLSSLHFTRHLDLCCSSQMYSEVHRVQKCCRIFSRSD 146
           RL+    +RH    C+    S+VH+   C + FSRSD
Sbjct: 346 RLAKHIASRHRQRSCTLDDASKVHKCNMCSKSFSRSD 382


>Z81510-4|CAB04164.1|  839|Caenorhabditis elegans Hypothetical
           protein F21D9.5 protein.
          Length = 839

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = -2

Query: 190 VHRVQKCCRIFSRSDYGKNITDKTIVRI--SVRPSSFLYRQSKNL 62
           + R +K C+I   + + +N+ ++T VR+    R +SF  ++ KNL
Sbjct: 612 LQRDEKVCKILESALHIRNVLNQTEVRVWDDTRNTSFNVKEIKNL 656


>Z36753-17|CAA85342.1|  821|Caenorhabditis elegans Hypothetical
           protein T09A5.10 protein.
          Length = 821

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -1

Query: 221 SLLQFTNVFGSPSRP--EVLSNLF*ERLWKKH 132
           S+LQ TN FGS   P  E +S+L    LW++H
Sbjct: 10  SMLQLTNYFGSNFTPKTETISSL--AELWERH 39


>AF240692-1|AAF61239.1|  821|Caenorhabditis elegans LIN-5 protein.
          Length = 821

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -1

Query: 221 SLLQFTNVFGSPSRP--EVLSNLF*ERLWKKH 132
           S+LQ TN FGS   P  E +S+L    LW++H
Sbjct: 10  SMLQLTNYFGSNFTPKTETISSL--AELWERH 39


>U23179-7|AAC46721.1|  782|Caenorhabditis elegans Hypothetical
           protein C27D6.1 protein.
          Length = 782

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +3

Query: 210 LQQRSKWRVKCRELSLNDLVLIEETN 287
           +Q + +W+VK +E+ + +  L+EE N
Sbjct: 281 VQAKEEWQVKSQEMEIQNKQLVEELN 306


>Z54216-4|CAA90947.1|  421|Caenorhabditis elegans Hypothetical
           protein T24H10.5 protein.
          Length = 421

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 226 LDLCCSSQMYSEVHRVQKCCRIFSRSDYGKNITDKTIVRIS 104
           L +C  +Q++ EV    KCC I ++     N  D  I+ ++
Sbjct: 369 LPMCLGTQIFIEV---SKCCSIAAKDSKTPNTEDHEIIELN 406


>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical
           protein F30H5.3 protein.
          Length = 1599

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 372 YLTRLLWVCCPVQEIACILFLTSSKEVTC 286
           Y    +W CCP +   C   L+  K VTC
Sbjct: 654 YFDGYVWGCCPTKAYTCT--LSPHKGVTC 680


>AL033508-1|CAA22058.2|  821|Caenorhabditis elegans Hypothetical
           protein Y106G6G.2 protein.
          Length = 821

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 12/46 (26%), Positives = 30/46 (65%)
 Frame = -2

Query: 226 LDLCCSSQMYSEVHRVQKCCRIFSRSDYGKNITDKTIVRISVRPSS 89
           +++ CS+++   +  V++C +I+ R  YGK+  ++  VR++ R ++
Sbjct: 117 VEMVCSNELKVSMSDVEQCVQIYKRL-YGKSEEER--VRVACRAAT 159


>AL021483-3|CAA16343.1|  331|Caenorhabditis elegans Hypothetical
           protein Y38H8A.4 protein.
          Length = 331

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -2

Query: 295 GDVL--VSSIKTKSLRLSSLHFTRHLDLCCSSQMYSEVHRVQKCCRIF 158
           GD+L  +  IKT S   +   F + +      Q Y+ VHR  KC  IF
Sbjct: 121 GDLLRKMKKIKTMSEENAKFTFRQFIAALMHLQSYNIVHRDLKCENIF 168


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,861,593
Number of Sequences: 27780
Number of extensions: 170262
Number of successful extensions: 488
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)