Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_A02
         (392 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    25   0.31 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   2.2  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   2.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   6.7  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   6.7  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   6.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   6.7  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 25.0 bits (52), Expect = 0.31
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -2

Query: 196 SEVHRVQKCCRIFSRSDYGKNITDKTIVRISVRPSSF 86
           S+VH +   C I S+ DY + +T+ ++  + +  S F
Sbjct: 274 SKVHIIDSICGIDSKPDY-RELTEYSVTSVRLISSGF 309


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 107 NSYYCFVRNVFSIIAPRKD 163
           N+YY F+R  F    P K+
Sbjct: 230 NTYYFFLRQAFPFWLPSKE 248


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 107 NSYYCFVRNVFSIIAPRKD 163
           N+YY F+R  F    P K+
Sbjct: 230 NTYYFFLRQAFPFWLPSKE 248


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 197 IHL*TAAKIQMACEVQRAES 256
           IHL T    ++ACE+Q   S
Sbjct: 200 IHLSTGNYSRLACEIQFVRS 219


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -3

Query: 249 ALCTSHAIWIFAAVHKCIRKSIASRSAVESFLGAIMEKTLRTKQ 118
           ALC   A+W F  +      S+ SR  +E+ +       LR  Q
Sbjct: 92  ALCKEEALWNFPMI------SVFSRQDIETIIRRNSRYPLRPPQ 129


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 72  DCLYKKELGRTEIRTIVLSVMFFP*SL 152
           DCL KKE       T+  + +F P +L
Sbjct: 290 DCLLKKERNGPTQTTLNATTLFCPPNL 316


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 72  DCLYKKELGRTEIRTIVLSVMFFP*SL 152
           DCL KKE       T+  + +F P +L
Sbjct: 380 DCLLKKERNGPTQTTLNATTLFCPPNL 406


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,168
Number of Sequences: 438
Number of extensions: 2005
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9638226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)