Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_A01
(365 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy... 28 0.39
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 26 1.6
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S... 25 2.8
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc... 25 2.8
SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|ch... 25 2.8
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip... 25 3.7
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk... 25 3.7
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 4.9
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 24 6.4
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 24 6.4
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 24 8.5
>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 28.3 bits (60), Expect = 0.39
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -2
Query: 274 SEPLIQLYLSISSNRCKIRENISK*HFSNSATDGCIGGVE 155
SEP +Q+ LS SSN C++ + + + H +S G +E
Sbjct: 134 SEPPLQISLSTSSNGCRLAQRLLR-HVVSSLPSGMPEAIE 172
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 26.2 bits (55), Expect = 1.6
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 323 NWCKIGRMRRKGFPMNF 273
NW IGR+RR +P +F
Sbjct: 644 NWSSIGRLRRSEWPRSF 660
>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
Sop2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 377
Score = 25.4 bits (53), Expect = 2.8
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +2
Query: 224 FTAVTTDGEIELYEWLGNSW 283
F T ++ELYE GN W
Sbjct: 26 FVTTTATNQVELYEQDGNGW 45
>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 835
Score = 25.4 bits (53), Expect = 2.8
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = -1
Query: 107 ISLMSNNSNYMTPGVYGSFPLFSYCLICMGTQ 12
I++ + SN + Y P++S C+ C+ Q
Sbjct: 49 IAITRSESNLQSNYKYDQVPMYSICVFCLSGQ 80
>SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 440
Score = 25.4 bits (53), Expect = 2.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 166 QYNHLLHYLKNATWRYFP*FYSGYY*WR 249
+YN L L NA+W P YS Y +R
Sbjct: 91 EYNEELKQLDNASWGNAPWLYSECYYYR 118
>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
antiporter Sod22|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 25.0 bits (52), Expect = 3.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 176 WLYWWSGVLEELHVNRTFVLIFNIS 102
W W+S EE HV+ L+ N+S
Sbjct: 279 WDSWFSKKTEESHVSNVIDLLLNLS 303
>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 306
Score = 25.0 bits (52), Expect = 3.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 303 DETKRIPHEFPSHSYNSISPSVVTAVK 223
D K I HE+P ++ I PSV T+++
Sbjct: 247 DWNKFIFHEYPPKPWSEILPSVDTSIQ 273
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 24.6 bits (51), Expect = 4.9
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +2
Query: 197 MLLGDIFPNFTAVTTDGEIELYEWLG 274
+L GDIF + ++ D + +Y W G
Sbjct: 1390 LLEGDIFKSMYVLSLDHLLSIYYWFG 1415
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 24.2 bits (50), Expect = 6.4
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -2
Query: 67 AFTAAFHCFPIVLFVWVLSRLV 2
AF ++ CFP+V+ V++ L+
Sbjct: 514 AFFQSYLCFPVVVIVFIAHALI 535
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 24.2 bits (50), Expect = 6.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 279 EFPSHSYNSISPSVVTAVKLGKISPSSI 196
EF SY+SI+PS ++ K + SP ++
Sbjct: 242 EFEHESYDSINPSGMSPPKTIQFSPHTM 269
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription
factor Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 23.8 bits (49), Expect = 8.5
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 41 KTMESCRKRQVSCN 82
K E+CRKR+V C+
Sbjct: 12 KACENCRKRKVKCS 25
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,667,495
Number of Sequences: 5004
Number of extensions: 34173
Number of successful extensions: 117
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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