Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_A01
(365 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957... 36 0.010
07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080 35 0.017
12_01_0603 + 4937472-4938351,4938597-4938689,4938820-4939589,493... 27 4.5
10_08_0585 - 18998013-18998306,18998448-18998630,18999048-189990... 27 4.5
08_01_0841 + 8223768-8223871,8227749-8228745,8228779-8228828,822... 27 4.5
06_03_0418 + 20581420-20583207,20583243-20583254 27 4.5
01_05_0449 - 22349299-22349310,22349842-22350011,22350232-223503... 27 4.5
02_02_0188 + 7617838-7620231,7621856-7622071,7622167-7622328,762... 27 6.0
01_06_1473 - 37619415-37619561,37619649-37619723,37619800-376199... 27 6.0
08_02_1496 - 27541081-27541549,27541626-27541888 26 7.9
08_02_0544 + 18445810-18445995,18446894-18447053,18448186-184483... 26 7.9
>07_03_1427 +
26495072-26495148,26495323-26495468,26495581-26495729,
26495829-26496224
Length = 255
Score = 35.9 bits (79), Expect = 0.010
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +3
Query: 297 SHPSDFTPVCTTELA 341
SHP DFTPVCTTELA
Sbjct: 72 SHPGDFTPVCTTELA 86
Score = 30.7 bits (66), Expect = 0.37
Identities = 11/33 (33%), Positives = 23/33 (69%)
Frame = +2
Query: 197 MLLGDIFPNFTAVTTDGEIELYEWLGNSWGILF 295
+ +GD PN +T G+I +++++G+++ ILF
Sbjct: 39 LTIGDTVPNLELDSTHGKIRIHDFVGDTYVILF 71
>07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080
Length = 220
Score = 35.1 bits (77), Expect = 0.017
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +3
Query: 297 SHPSDFTPVCTTELA 341
SHP+DFTPVCTTEL+
Sbjct: 37 SHPADFTPVCTTELS 51
Score = 32.7 bits (71), Expect = 0.091
Identities = 12/33 (36%), Positives = 24/33 (72%)
Frame = +2
Query: 197 MLLGDIFPNFTAVTTDGEIELYEWLGNSWGILF 295
+ LGD+ P+ TT G+I L++++G+++ I+F
Sbjct: 4 LTLGDVVPDLELDTTHGKIRLHDFVGDAYVIIF 36
>12_01_0603 +
4937472-4938351,4938597-4938689,4938820-4939589,
4939706-4939809,4940026-4940548,4940697-4941074
Length = 915
Score = 27.1 bits (57), Expect = 4.5
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 292 KDSP*ISEPLIQLYLSISSNRCKIRENISK 203
KD ISEP + L + SS R +I E +SK
Sbjct: 219 KDPEVISEPAVNLSKNFSSIRSRIEELVSK 248
>10_08_0585 -
18998013-18998306,18998448-18998630,18999048-18999089,
18999226-18999495,18999903-19000454,19000546-19000770,
19001435-19001640,19001738-19001936,19002166-19002381,
19002887-19002991,19003127-19003243,19003366-19003548,
19004292-19004468,19004714-19004816,19005066-19005523
Length = 1109
Score = 27.1 bits (57), Expect = 4.5
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 138 VKFL*HSTPPIQPSVALFEKCY 203
+KF H ++P+VAL E+C+
Sbjct: 34 IKFFPHQVSDLEPAVALLEECH 55
>08_01_0841 +
8223768-8223871,8227749-8228745,8228779-8228828,
8228896-8230396
Length = 883
Score = 27.1 bits (57), Expect = 4.5
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 215 FPNFTAVTTDGEI-ELYEWLGNSWGILFVSSFR 310
FP + DG I ++ W+ NSW + + +R
Sbjct: 753 FPRLQTIKLDGHIGKMPYWISNSWTLAVIKLYR 785
>06_03_0418 + 20581420-20583207,20583243-20583254
Length = 599
Score = 27.1 bits (57), Expect = 4.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 224 FTAVTTDGEIELYEWLGNSWGILF 295
+ V +DG + LY W +SW I++
Sbjct: 284 YIRVESDGHMRLYGWNSSSWVIMY 307
>01_05_0449 -
22349299-22349310,22349842-22350011,22350232-22350303,
22351740-22351806,22352516-22352647,22352844-22353070,
22353150-22353359,22353565-22353687,22353971-22354075,
22354324-22354435
Length = 409
Score = 27.1 bits (57), Expect = 4.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 237 VTAVKLGKISPSSIFQIVQQMVVLVEWSV 151
VT + +G I+ SS+ Q+V Q V + W +
Sbjct: 110 VTEIVIGLINTSSLIQVVSQESVKLNWGM 138
>02_02_0188 +
7617838-7620231,7621856-7622071,7622167-7622328,
7622466-7622516,7622936-7623070,7623161-7623184,
7623341-7623452,7623776-7623901,7624004-7624053,
7624339-7624497,7624582-7624677,7624751-7624866,
7624907-7624984,7624985-7625108,7625193-7625306,
7625423-7625503,7625616-7625756,7625834-7625848
Length = 1397
Score = 26.6 bits (56), Expect = 6.0
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 224 FTAVTTDGEIELYEWLGNSW 283
F ++ DG + +Y W G SW
Sbjct: 297 FMSLENDGHLRVYRWDGTSW 316
>01_06_1473 -
37619415-37619561,37619649-37619723,37619800-37619919,
37620074-37620127,37620204-37620426,37620506-37620585,
37620675-37620764,37620847-37620960,37621192-37621272,
37621383-37621490,37621677-37621722,37621802-37621899,
37621975-37622148,37622456-37622548,37623229-37623285,
37623399-37623438,37623567-37623685,37624179-37624298,
37624723-37624815,37624940-37625251,37625325-37625444,
37625545-37625658,37625731-37625910,37625996-37626110,
37626195-37626358,37626584-37626769,37626888-37626978,
37627089-37627153,37627223-37627297,37627410-37627493,
37627575-37627742,37628160-37629293
Length = 1579
Score = 26.6 bits (56), Expect = 6.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 341 CQLSSANWCKIGRMRRKGFP 282
C++ S W KIGR+RR P
Sbjct: 696 CKVPSNMWSKIGRLRRSVMP 715
>08_02_1496 - 27541081-27541549,27541626-27541888
Length = 243
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 221 NFTAVTTDGEIELYEWLGNSWGIL 292
NFTA D I+L+ LGN W ++
Sbjct: 69 NFTADEDDLIIKLHSLLGNKWSLI 92
>08_02_0544 +
18445810-18445995,18446894-18447053,18448186-18448386,
18448474-18448538,18448697-18448761,18448784-18448874,
18448965-18449051,18449204-18449254,18449604-18449825,
18449987-18450080,18450159-18450299,18450391-18450476
Length = 482
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 254 ELYEWLGNSWGILFVSSFRFYTSLHY*VGTGYSN 355
+L WLG + I+F+ SF + S G G SN
Sbjct: 428 KLINWLGRASLIIFILSFMIFISAISLGGVGISN 461
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,312,030
Number of Sequences: 37544
Number of extensions: 198633
Number of successful extensions: 477
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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