Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_P24
         (364 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    26   2.1  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   2.1  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     25   4.8  

>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 127  DEFSFSMFYSLPPFSDLIFSDVAVRVKPLS 216
            D  +  +F +L  F+DLI S VA+RV   S
Sbjct: 2027 DIIATPLFQNLTEFNDLIKSKVAIRVSKTS 2056


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 232 AEIIAGPALIRAA-RIVSCDAPQASYYVAS 318
           A  +A P L+    +I SCD P +++Y  S
Sbjct: 230 ASFVASPLLLEDCNKIASCDLPYSTFYANS 259


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 46  GRANHTELDTYSNLMVYAQQFYGAVTSDEFSFSMFYSLPPFSDLIF 183
           GR +H    +  +L +Y +  +GA  S  F+F    SL     L+F
Sbjct: 667 GRTDHRHNFSLHHLNLYYESSFGAKASSLFAFLPQLSLCMLIPLVF 712


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,455,156
Number of Sequences: 5004
Number of extensions: 25350
Number of successful extensions: 56
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)