Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_P24
(364 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0838 - 20927020-20927207,20927288-20927491,20927654-209282... 28 2.6
07_03_0556 + 19438394-19438537,19438638-19438747,19442018-194422... 27 4.5
12_02_0861 - 23763927-23764034,23764140-23764196,23764624-237647... 27 6.0
12_02_0700 + 22259921-22260207,22264678-22264750,22265062-222658... 27 6.0
03_02_0488 - 8824980-8825267,8825364-8827775 27 6.0
11_01_0767 + 6438648-6438809,6439146-6440000 26 7.9
05_01_0330 - 2591652-2592485 26 7.9
01_06_0646 - 30832201-30832838,30833643-30833838,30833975-308341... 26 7.9
>10_08_0838 - 20927020-20927207,20927288-20927491,20927654-20928297,
20928549-20928788,20928884-20928978,20929087-20929434,
20929824-20930042,20930422-20930487,20931191-20931362,
20931456-20931703,20931933-20932073,20932238-20932330,
20932421-20932471,20933571-20933693,20933793-20934035,
20934131-20934211,20935245-20935340,20935535-20936320,
20936443-20937012,20937322-20937427,20938102-20938206,
20938311-20938432,20939321-20939413,20940081-20940104
Length = 1685
Score = 27.9 bits (59), Expect = 2.6
Identities = 20/51 (39%), Positives = 23/51 (45%)
Frame = +1
Query: 172 DLIFSDVAVRVKPLSHAKRSAEIIAGPALIRAARIVSCDAPQASYYVASDP 324
D + S AVRV LS S + P I+A VSC A SY S P
Sbjct: 1273 DWMASHKAVRVTSLSRGYTSNRGLRSPHQIQACAAVSCYATCTSYPKFSFP 1323
>07_03_0556 +
19438394-19438537,19438638-19438747,19442018-19442288,
19442398-19442504,19442625-19443017,19443326-19443700,
19443799-19443877,19444745-19444957
Length = 563
Score = 27.1 bits (57), Expect = 4.5
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = +1
Query: 55 NHTELDTYSNLMVYAQQFYGA-VTSDE--FSFSMFYSLPPFSDLIFSDVAVRVKPLSHAK 225
+HT TYS+L V+ Q Y +T+D+ + +++ S F+ I S AV S K
Sbjct: 260 SHTMQTTYSSLDVHLGQSYSVLLTADQPAYDYAVVVS-TRFTSKIISTTAVLRYSGSGGK 318
Query: 226 RSAEIIAGPAL 258
A + GP +
Sbjct: 319 SPAALPGGPTI 329
>12_02_0861 -
23763927-23764034,23764140-23764196,23764624-23764740,
23764825-23764924,23765049-23765239,23765328-23765421,
23765918-23766023,23766223-23766337,23766487-23766554,
23766724-23767047,23767444-23767647,23767910-23768059,
23768151-23768256,23768383-23768490
Length = 615
Score = 26.6 bits (56), Expect = 6.0
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -3
Query: 302 EA*GASHDTIRAALMRAGPAIISAERFACDR-GFTLTATSLNIKSENGG 159
E G + D ++AAL R GP + ER G TL + + NGG
Sbjct: 36 EGKGVTVDELKAALRRRGPDSLGCERLRVRADGTTLGSDGCDCGVGNGG 84
>12_02_0700 +
22259921-22260207,22264678-22264750,22265062-22265802,
22265849-22266424,22266505-22266957
Length = 709
Score = 26.6 bits (56), Expect = 6.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 58 HTELDTYSNLMVYAQQFYGAVTSDE 132
H L+ Y NL+V Q+ G + +DE
Sbjct: 331 HLSLEKYKNLVVQGQRILGKLAADE 355
>03_02_0488 - 8824980-8825267,8825364-8827775
Length = 899
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 24 SAWLSAYGQSEPHRTRHIFKSHGVRS 101
+A++SA Q EP +RH H RS
Sbjct: 677 AAFISAVSQQEPETSRHSSSQHSSRS 702
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 26.2 bits (55), Expect = 7.9
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 121 TSDEFSFSMFYSLPPFSDLIF 183
TSD ++ + YSLP F+ L+F
Sbjct: 154 TSDTYNLKLRYSLPSFAMLVF 174
>05_01_0330 - 2591652-2592485
Length = 277
Score = 26.2 bits (55), Expect = 7.9
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -3
Query: 209 GFTLTATSLNIKSENGGS 156
G+T+T +NI+SE GGS
Sbjct: 217 GYTMTLVEVNIQSEPGGS 234
>01_06_0646 -
30832201-30832838,30833643-30833838,30833975-30834126,
30834258-30834303,30834992-30835216,30835374-30835414,
30835705-30835834,30835951-30836019,30836254-30836307,
30836389-30836547,30836854-30836991,30837079-30837141,
30837225-30837264,30837369-30837415,30838062-30838373
Length = 769
Score = 26.2 bits (55), Expect = 7.9
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 85 DLNMCLVRCGSLCP 44
D+ C+V CG LCP
Sbjct: 161 DVKACIVTCGGLCP 174
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,706,639
Number of Sequences: 37544
Number of extensions: 169623
Number of successful extensions: 418
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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