Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_P24
         (364 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93396-7|CAL49449.1|  196|Caenorhabditis elegans Hypothetical pr...    28   2.3  
U39667-2|AAQ91910.1|  426|Caenorhabditis elegans Xo lethal prote...    27   3.0  
L35129-1|AAA67047.1|  426|Caenorhabditis elegans xol-1 protein.        27   3.0  
AF003146-4|AAB54200.2|  650|Caenorhabditis elegans Hypothetical ...    26   7.0  
AF003140-1|ABR92609.1|  538|Caenorhabditis elegans Hypothetical ...    26   9.3  

>Z93396-7|CAL49449.1|  196|Caenorhabditis elegans Hypothetical
           protein ZC15.10 protein.
          Length = 196

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
 Frame = +1

Query: 16  LGKVPGSVLMGRANH-----TELDTYSNLMVYAQQFYGAVTSDEFSFSMFYSLPPFSDLI 180
           LG VP S + G  +      T +   + L     Q YGAV +   + + F    PF + +
Sbjct: 70  LGVVPSSWISGWKDLESEVLTRVGARNELEFAMAQVYGAVLNFHRNRAYFVKDMPFVEDL 129

Query: 181 FSDVAVRVKPL 213
            SD A  ++PL
Sbjct: 130 ISDTATTIRPL 140


>U39667-2|AAQ91910.1|  426|Caenorhabditis elegans Xo lethal protein
           1, isoform c protein.
          Length = 426

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +1

Query: 88  MVYAQQFYGAVTSDEFSFSMFYSLPPFSDLIFSDVAVRVKPLSH 219
           + Y+ Q+Y ++T     FS   S+P FS L+F  V++ +  + H
Sbjct: 321 IAYSAQYYLSMTH----FSNRISIPLFSSLVFLTVSIVINAMCH 360


>L35129-1|AAA67047.1|  426|Caenorhabditis elegans xol-1 protein.
          Length = 426

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +1

Query: 88  MVYAQQFYGAVTSDEFSFSMFYSLPPFSDLIFSDVAVRVKPLSH 219
           + Y+ Q+Y ++T     FS   S+P FS L+F  V++ +  + H
Sbjct: 321 IAYSAQYYLSMTH----FSNRISIPLFSSLVFLTVSIVINAMCH 360


>AF003146-4|AAB54200.2|  650|Caenorhabditis elegans Hypothetical
           protein F56F4.3 protein.
          Length = 650

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 226 RSAEIIAG-PALIRAARIVSCDAPQASYYVASDPNFLSHAYKN 351
           R A ++ G P LI   RI+       + Y+A DP FL +AYK+
Sbjct: 125 RMAPMLGGIPWLILCLRIIY------TVYIAFDPRFLLYAYKS 161


>AF003140-1|ABR92609.1|  538|Caenorhabditis elegans Hypothetical
           protein C44E4.5 protein.
          Length = 538

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 222 KTFSRDNRRSCPHKSCTD 275
           K FS DN+  C +  CTD
Sbjct: 54  KVFSNDNQLFCDYSKCTD 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,212,870
Number of Sequences: 27780
Number of extensions: 147522
Number of successful extensions: 308
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)