Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_P22
         (383 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    25   5.4  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    24   7.1  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    24   9.4  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    24   9.4  
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    24   9.4  
SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces...    24   9.4  

>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +2

Query: 155 RTYFTNLI--VESCHHIYQYERDLR 223
           +T F  LI  VE CH +  Y RDL+
Sbjct: 121 KTVFLQLISAVEHCHSVGIYHRDLK 145


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = +2

Query: 143 IIIKRTYFTNLIVESCHHIYQYER 214
           I++K  YF++L++     +Y Y++
Sbjct: 644 ILMKDGYFSHLVITKLWQVYSYQK 667


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 191 HHIYQYERDLRLVTSFESTI 250
           H++Y  +++L L+TS   TI
Sbjct: 516 HYVYIVKKNLELITSIHETI 535


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 12/61 (19%), Positives = 30/61 (49%)
 Frame = +2

Query: 107  SVLEYINSVCVLIIIKRTYFTNLIVESCHHIYQYERDLRLVTSFESTISEN*SYAKIRVS 286
            +V + + ++     I+  +++ ++ E C  I+QY   +R V + E  +  + +Y    V 
Sbjct: 1473 TVTDDVATILHAAFIQFDHYSRIVQEQCQQIFQYV--VRKVLAMEGRLDYDDAYFDFNVE 1530

Query: 287  A 289
            +
Sbjct: 1531 S 1531


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +3

Query: 48  RSQTITFLTDYLFKSCVTNNLCWNILTVCVSLSS-SNGLI 164
           R+  I  +    F   V   + W IL + +SLS   NGL+
Sbjct: 92  RAHRILSIFQEQFIENVVKEINWEILAILISLSGIENGLV 131


>SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -2

Query: 376 RISCSPVERILSRDANELRIECYRCSKSQRTDSYFSVG 263
           R  CS  E +   +   L ++  RCS S+ T  Y + G
Sbjct: 41  RTHCSQSELLQLIEQISLLLQPVRCSASKVTSKYLTTG 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,453,629
Number of Sequences: 5004
Number of extensions: 27289
Number of successful extensions: 69
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)