Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_P22
         (383 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0630 - 19410852-19411235,19411370-19412257,19412440-194129...    27   3.8  
09_02_0097 - 4232707-4232991,4233672-4233913,4234253-4234427           27   6.7  
08_02_0111 - 12678660-12678905,12680144-12680204,12680282-126803...    27   6.7  
03_05_1032 - 29861859-29862011,29862347-29862470,29862557-298627...    27   6.7  
02_01_0740 - 5511434-5511547,5511952-5512023,5512106-5512300,551...    27   6.7  
05_07_0308 + 29115892-29116083,29116771-29116885,29116978-291170...    26   8.9  

>10_08_0630 -
           19410852-19411235,19411370-19412257,19412440-19412941,
           19413662-19414135,19414982-19415040,19415468-19415629
          Length = 822

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 136 CPYHHQTDLFYKSYRGIMPSYLSVRERSPA 225
           CPY HQ D  Y++   +  S  S    +PA
Sbjct: 587 CPYFHQLDALYRNKAALNSSSSSAAAAAPA 616


>09_02_0097 - 4232707-4232991,4233672-4233913,4234253-4234427
          Length = 233

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 320 PELVRIPREDPFNGRTRNSEF 382
           P ++ I RE PF+GR R + +
Sbjct: 35  PNIIAIVREQPFSGRERENSY 55


>08_02_0111 -
           12678660-12678905,12680144-12680204,12680282-12680326,
           12680721-12680866
          Length = 165

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 57  TITFLTDYLFKSCVTNNLCWNILTVCVSLSSSNG 158
           T+  + D      + ++ CWN + + V+LS+SNG
Sbjct: 4   TVAHIMDQQEDIKIKSSKCWNPIRLPVTLSTSNG 37


>03_05_1032 -
           29861859-29862011,29862347-29862470,29862557-29862759,
           29863081-29863199,29863489-29863623,29863695-29863950,
           29864749-29864880,29865001-29865222
          Length = 447

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 130 CVCPYHHQTDLFYKSYRGIMPSYLSVRERSPASDV 234
           C CP +   + F K Y G+ P  +  +E  P + V
Sbjct: 142 CECPENEFPEPFKKPYSGLSPDSMICQEGKPQATV 176


>02_01_0740 - 5511434-5511547,5511952-5512023,5512106-5512300,
            5512408-5512611,5512690-5512848,5513144-5513249,
            5513387-5513554,5513644-5513834,5514410-5514634,
            5514818-5514935,5515023-5515195,5515280-5515327,
            5515484-5515589,5515697-5515802,5516211-5516332,
            5516661-5516741,5516844-5516934,5517036-5517132,
            5517287-5517919
          Length = 1002

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +2

Query: 116  EYINSVCVLIIIKRTYFTNLIVESCHHIYQYERDLRLVTSFEST-ISEN*SYAKIRVSAL 292
            E +NS+ V++  K   +   IVE      Q  R  RL    E T  SE  S  + R+ AL
Sbjct: 849  EQMNSITVMLRKKYKKYLQAIVEKLVSNAQANRTTRLKRILEETRESEGESDIRERMQAL 908

Query: 293  RLRAS 307
            R+  S
Sbjct: 909  RVHLS 913


>05_07_0308 +
           29115892-29116083,29116771-29116885,29116978-29117087,
           29118225-29118350,29118450-29118570,29118665-29118749,
           29118854-29118967,29119061-29119100,29119517-29119665,
           29120223-29120412,29121674-29122228,29123588-29123815,
           29123904-29124044,29124134-29124334,29124447-29124728
          Length = 882

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +3

Query: 36  FFNQRSQTITFLTDYLFKSCV---TNNLCWNILTVCVSLSSSNGLILQILSWNHAII 197
           F  +     +F   YL + C+   TNN   ++L+    ++    LI+ + SW  +II
Sbjct: 238 FLRRNFARSSFYRSYLEEPCLWVETNNTTLSLLSSNAEIALGFLLIISLFSWQRSII 294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,450,142
Number of Sequences: 37544
Number of extensions: 146499
Number of successful extensions: 367
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)