Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_P20
         (420 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    28   0.68 
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    25   3.6  
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    25   4.8  
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy...    25   6.3  
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc...    24   8.4  

>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 27.9 bits (59), Expect = 0.68
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 146 YVICQLLNVPCLLIEKVRCGVGCL 75
           YV    L   C+L+ ++RC +GCL
Sbjct: 486 YVCHSALEEDCVLLGEIRCHIGCL 509


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 143 HILPFMIYNNGLLHIGAIELY 205
           +IL    Y +GLLHIG + +Y
Sbjct: 61  YILSMFPYPSGLLHIGHVRVY 81


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 300 LLNYALRNIVLTLLNGC 350
           L NY+LRNI+  +L GC
Sbjct: 69  LPNYSLRNIIWDVLAGC 85


>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 370

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 143 VICQLLNVPCLLIEKVRCGVGC 78
           VIC+ L   C+      CG+GC
Sbjct: 260 VICENLMDRCIASNSESCGIGC 281


>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 308 IQKPPAAPVTHRNVSEDPP 252
           I  PPA     +N S+DPP
Sbjct: 108 ISNPPAVSHQSKNTSQDPP 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,689,326
Number of Sequences: 5004
Number of extensions: 33732
Number of successful extensions: 68
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)